Variant report

Variant rs62109987
Chromosome Location chr19:28224362-28224363
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:28214200-28225400 Weak transcription Muscle Satellite Cultured Cells --
2 chr19:28215800-28228400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr19:28216000-28235800 Weak transcription HSMM muscle
4 chr19:28217000-28237600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
5 chr19:28217600-28225000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr19:28217600-28229800 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
7 chr19:28218000-28226800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
8 chr19:28218600-28228400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
9 chr19:28218600-28235600 Weak transcription Skeletal Muscle Female skeletal muscle
10 chr19:28218800-28227000 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
11 chr19:28219200-28225200 ZNF genes & repeats Liver Liver
12 chr19:28219400-28228200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr19:28220200-28238000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
14 chr19:28220200-28238000 Weak transcription HMEC breast
15 chr19:28220600-28231000 Weak transcription Right Ventricle heart
16 chr19:28220800-28237800 Weak transcription Brain Cingulate Gyrus brain
17 chr19:28222000-28227800 Weak transcription Brain Inferior Temporal Lobe brain
18 chr19:28222200-28225000 ZNF genes & repeats Dnd41 blood
19 chr19:28222600-28224400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr19:28222600-28225400 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
21 chr19:28222600-28229400 Weak transcription Brain Hippocampus Middle brain
22 chr19:28223200-28224600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
23 chr19:28223200-28225400 Weak transcription Fetal Adrenal Gland Adrenal Gland
24 chr19:28223400-28224400 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
25 chr19:28223400-28236200 Weak transcription ES-I3 Cell Line embryonic stem cell
26 chr19:28223400-28237000 Weak transcription Brain Angular Gyrus brain
27 chr19:28223600-28225400 ZNF genes & repeats Primary hematopoietic stem cells blood
28 chr19:28223600-28238200 ZNF genes & repeats Brain Germinal Matrix brain
29 chr19:28223600-28238800 ZNF genes & repeats Fetal Brain Female brain
30 chr19:28223800-28237800 Weak transcription Primary B cells from cord blood blood
31 chr19:28224200-28224400 Strong transcription Adipose Nuclei Adipose
32 chr19:28224200-28224600 Strong transcription Duodenum Smooth Muscle Duodenum
33 chr19:28224200-28224600 ZNF genes & repeats Pancreatic Islets Pancreatic Islet
34 chr19:28224200-28224800 Genic enhancers Left Ventricle heart
35 chr19:28224200-28225400 Enhancers HSMMtube muscle
36 chr19:28224200-28225600 Enhancers Fetal Heart heart
37 chr19:28224200-28231200 Strong transcription Ovary ovary
38 chr19:28224200-28232800 Weak transcription Colon Smooth Muscle Colon
39 chr19:28224200-28233000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr19:28224200-28235800 Strong transcription Stomach Smooth Muscle stomach
41 chr19:28224200-28238200 ZNF genes & repeats Aorta Aorta

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