Variant report

Variant rs62110029
Chromosome Location chr19:28231919-28231920
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:28216000-28235800 Weak transcription HSMM muscle
2 chr19:28217000-28237600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
3 chr19:28218600-28235600 Weak transcription Skeletal Muscle Female skeletal muscle
4 chr19:28220200-28238000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr19:28220200-28238000 Weak transcription HMEC breast
6 chr19:28220800-28237800 Weak transcription Brain Cingulate Gyrus brain
7 chr19:28223400-28236200 Weak transcription ES-I3 Cell Line embryonic stem cell
8 chr19:28223400-28237000 Weak transcription Brain Angular Gyrus brain
9 chr19:28223600-28238200 ZNF genes & repeats Brain Germinal Matrix brain
10 chr19:28223600-28238800 ZNF genes & repeats Fetal Brain Female brain
11 chr19:28223800-28237800 Weak transcription Primary B cells from cord blood blood
12 chr19:28224200-28232800 Weak transcription Colon Smooth Muscle Colon
13 chr19:28224200-28233000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
14 chr19:28224200-28235800 Strong transcription Stomach Smooth Muscle stomach
15 chr19:28224200-28238200 ZNF genes & repeats Aorta Aorta
16 chr19:28224600-28234400 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr19:28225200-28232600 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr19:28225200-28238000 Weak transcription Liver Liver
19 chr19:28225400-28233000 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr19:28225400-28237000 Weak transcription Brain Substantia Nigra brain
21 chr19:28225800-28233200 Weak transcription Fetal Adrenal Gland Adrenal Gland
22 chr19:28227600-28233400 Strong transcription Duodenum Smooth Muscle Duodenum
23 chr19:28227800-28233200 Strong transcription Adipose Nuclei Adipose
24 chr19:28227800-28237600 Weak transcription Cortex derived primary cultured neurospheres brain
25 chr19:28227800-28241200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr19:28228200-28237800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
27 chr19:28228800-28232000 ZNF genes & repeats Fetal Stomach stomach
28 chr19:28228800-28237800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
29 chr19:28229400-28238000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
30 chr19:28229600-28232200 ZNF genes & repeats Primary neutrophils fromperipheralblood blood
31 chr19:28230000-28232200 ZNF genes & repeats Fetal Muscle Leg muscle
32 chr19:28230200-28232000 ZNF genes & repeats Primary hematopoietic stem cells blood
33 chr19:28230400-28232000 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
34 chr19:28230400-28232400 Genic enhancers Left Ventricle heart
35 chr19:28230600-28237400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
36 chr19:28230800-28237200 Weak transcription Brain Hippocampus Middle brain
37 chr19:28230800-28238200 Weak transcription A549 lung
38 chr19:28231000-28232200 Enhancers Right Ventricle heart
39 chr19:28231000-28232200 ZNF genes & repeats Sigmoid Colon Sigmoid Colon
40 chr19:28231000-28233200 Enhancers HSMMtube muscle
41 chr19:28231000-28238000 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
42 chr19:28231200-28232200 ZNF genes & repeats Ovary ovary
43 chr19:28231200-28234800 Weak transcription Dnd41 blood
44 chr19:28231200-28236000 Weak transcription Fetal Heart heart
45 chr19:28231200-28237000 Weak transcription Pancreas Pancrea
46 chr19:28231400-28234000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr19:28231400-28237000 Weak transcription Right Atrium heart
48 chr19:28231400-28238400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
49 chr19:28231600-28232000 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
50 chr19:28231600-28237400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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