Variant report

Variant	rs62150473
Chromosome Location	chr2:33822320-33822321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:33811527..33813581-chr2:33821139..33823062,2	MCF-7	breast:
2	chr2:33813884..33820375-chr2:33821086..33825904,10	K562	blood:

Variant related genes	Relation type
ENSG00000119812	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10188817	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1046038	0.87[ASN][1000 genomes]
rs13388224	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13391166	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13393407	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13418410	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1375194	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17657783	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2044644	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4670735	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs935625	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62150473	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33802200-33823600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:33807800-33822800	Weak transcription	Stomach Mucosa	stomach
3	chr2:33808400-33822600	Weak transcription	Fetal Heart	heart
4	chr2:33809200-33823400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr2:33812000-33823400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr2:33812800-33822800	Weak transcription	Thymus	Thymus
7	chr2:33818200-33822600	Weak transcription	Aorta	Aorta
8	chr2:33818400-33822600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr2:33818400-33823200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr2:33818400-33823400	Weak transcription	Esophagus	oesophagus
11	chr2:33818800-33822800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:33819000-33822600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr2:33819000-33822600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr2:33819000-33823600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr2:33819200-33822800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:33819400-33822600	Weak transcription	Fetal Brain Female	brain
17	chr2:33819400-33822600	Weak transcription	HSMMtube	muscle
18	chr2:33819400-33823200	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr2:33819600-33822600	Weak transcription	Brain Anterior Caudate	brain
20	chr2:33819600-33822800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr2:33819600-33822800	Weak transcription	Fetal Stomach	stomach
22	chr2:33819600-33823400	Weak transcription	Fetal Brain Male	brain
23	chr2:33820000-33822600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr2:33820000-33822800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr2:33820000-33823400	Weak transcription	Lung	lung
26	chr2:33820200-33822600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr2:33820200-33822600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr2:33820200-33822600	Weak transcription	Primary B cells from cord blood	blood
29	chr2:33820200-33822600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr2:33820200-33822600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr2:33820200-33822600	Weak transcription	Fetal Kidney	kidney
32	chr2:33820200-33822600	Weak transcription	Fetal Lung	lung
33	chr2:33820200-33822600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr2:33820200-33822800	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr2:33820200-33822800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr2:33820200-33822800	Weak transcription	Fetal Thymus	thymus
37	chr2:33820200-33823400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr2:33820200-33823400	Weak transcription	Colonic Mucosa	Colon
39	chr2:33820400-33822600	Weak transcription	Brain Germinal Matrix	brain
40	chr2:33820400-33822800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr2:33820400-33822800	Weak transcription	Fetal Intestine Large	intestine
42	chr2:33820400-33822800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr2:33820400-33824800	Active TSS	GM12878-XiMat	blood
44	chr2:33820600-33822400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr2:33820600-33822800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr2:33820600-33822800	Weak transcription	Brain Hippocampus Middle	brain
47	chr2:33820800-33822400	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr2:33820800-33822400	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr2:33820800-33822600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr2:33820800-33822600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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