Variant report

Variant	rs935625
Chromosome Location	chr2:33811516-33811517
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:33810053..33811709-chr2:33823243..33826152,2	MCF-7	breast:
2	chr2:33808414..33811833-chr2:33812334..33814725,3	K562	blood:
3	chr2:33809873..33812031-chr2:33813225..33815224,4	K562	blood:
4	chr2:33808678..33811896-chr2:33820806..33824783,4	K562	blood:
5	chr2:33810285..33812123-chr2:33814642..33817404,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119812	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10188817	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10198451	0.81[ASN][1000 genomes]
rs1046038	0.90[ASN][1000 genomes]
rs13388224	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13391166	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13393407	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13418410	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1375194	0.90[JPT][hapmap]
rs17657783	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2044644	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4670206	0.80[ASN][1000 genomes]
rs4670209	0.82[ASN][1000 genomes]
rs4670735	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62150473	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6722536	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7571269	0.80[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs935625	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33802200-33823600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:33803800-33822200	Weak transcription	Right Atrium	heart
3	chr2:33807000-33811600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:33807000-33818200	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr2:33807000-33820600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:33807400-33814000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:33807400-33817600	Weak transcription	Fetal Brain Male	brain
8	chr2:33807600-33812800	Strong transcription	NHLF	lung
9	chr2:33807600-33813800	Strong transcription	HSMM	muscle
10	chr2:33807600-33821000	Strong transcription	NH-A	brain
11	chr2:33807800-33812400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr2:33807800-33822800	Weak transcription	Stomach Mucosa	stomach
13	chr2:33808200-33813800	Strong transcription	Muscle Satellite Cultured Cells	--
14	chr2:33808200-33814600	Strong transcription	NHDF-Ad	bronchial
15	chr2:33808200-33820600	Strong transcription	Dnd41	blood
16	chr2:33808400-33812400	Weak transcription	K562	blood
17	chr2:33808400-33812800	Strong transcription	Primary hematopoietic stem cells	blood
18	chr2:33808400-33813600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr2:33808400-33814000	Strong transcription	Fetal Muscle Leg	muscle
20	chr2:33808400-33822600	Weak transcription	Fetal Heart	heart
21	chr2:33808600-33811800	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr2:33808600-33812000	Strong transcription	Placenta Amnion	Placenta Amnion
23	chr2:33808600-33812600	Strong transcription	Left Ventricle	heart
24	chr2:33808600-33812800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:33808600-33812800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr2:33808600-33812800	Strong transcription	Brain Inferior Temporal Lobe	brain
27	chr2:33808600-33812800	Strong transcription	Brain Substantia Nigra	brain
28	chr2:33808600-33813000	Strong transcription	Adipose Nuclei	Adipose
29	chr2:33808600-33813200	Strong transcription	Osteobl	bone
30	chr2:33808600-33813400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr2:33808600-33813600	Strong transcription	GM12878-XiMat	blood
32	chr2:33808600-33813600	Strong transcription	HSMMtube	muscle
33	chr2:33808600-33818800	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr2:33808600-33820200	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr2:33808600-33820400	Strong transcription	Primary B cells from peripheral blood	blood
36	chr2:33808600-33820400	Strong transcription	HUVEC	blood vessel
37	chr2:33808600-33820600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr2:33808600-33820800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr2:33808600-33821000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr2:33808800-33812200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
41	chr2:33808800-33812400	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr2:33808800-33812600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr2:33808800-33813000	Strong transcription	Fetal Muscle Trunk	muscle
44	chr2:33808800-33813000	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr2:33808800-33813600	Strong transcription	Fetal Thymus	thymus
46	chr2:33808800-33814000	Strong transcription	Placenta	Placenta
47	chr2:33808800-33814600	Strong transcription	Liver	Liver
48	chr2:33808800-33815800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr2:33808800-33816600	Strong transcription	A549	lung
50	chr2:33808800-33820400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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