Variant report

Variant	rs13418410
Chromosome Location	chr2:33800899-33800900
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10188817	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10198451	0.85[ASN][1000 genomes]
rs10201046	0.82[ASN][1000 genomes]
rs1046038	0.92[ASN][1000 genomes]
rs13388224	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13391166	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13393407	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17657783	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2044644	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4670206	0.84[ASN][1000 genomes]
rs4670209	0.83[ASN][1000 genomes]
rs4670735	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62150473	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6722536	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs7571269	0.84[ASN][1000 genomes]
rs935625	0.96[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13418410	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33757200-33809800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:33762200-33809800	Weak transcription	Aorta	Aorta
3	chr2:33766800-33809800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:33776000-33809800	Weak transcription	Pancreas	Pancrea
5	chr2:33778400-33806400	Weak transcription	Primary T cells from cord blood	blood
6	chr2:33778400-33807600	Weak transcription	NH-A	brain
7	chr2:33778400-33808600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr2:33780000-33808600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr2:33780400-33808600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:33780400-33809200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:33781200-33809800	Weak transcription	Gastric	stomach
12	chr2:33782000-33807000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr2:33784000-33809800	Weak transcription	Right Ventricle	heart
14	chr2:33784000-33810000	Weak transcription	Fetal Intestine Small	intestine
15	chr2:33784200-33809800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr2:33784600-33808400	Weak transcription	Fetal Muscle Leg	muscle
17	chr2:33786000-33808600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr2:33786400-33808800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr2:33788200-33802000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr2:33788200-33805400	Weak transcription	Placenta	Placenta
21	chr2:33788400-33808800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr2:33788600-33802000	Weak transcription	Brain Anterior Caudate	brain
23	chr2:33788600-33807400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr2:33788600-33808600	Weak transcription	Psoas Muscle	Psoas
25	chr2:33789400-33809400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr2:33789600-33808600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr2:33790800-33808600	Weak transcription	Adipose Nuclei	Adipose
28	chr2:33791000-33806800	Weak transcription	Primary B cells from cord blood	blood
29	chr2:33791400-33808600	Weak transcription	Left Ventricle	heart
30	chr2:33793000-33802800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr2:33794600-33807000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr2:33796200-33807000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr2:33797600-33810000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr2:33798200-33807200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr2:33798600-33802400	Weak transcription	Brain Angular Gyrus	brain
36	chr2:33799200-33802200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr2:33799400-33801800	Weak transcription	Brain Substantia Nigra	brain
38	chr2:33799600-33802000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr2:33799800-33802000	Weak transcription	Brain Hippocampus Middle	brain
40	chr2:33799800-33808800	Weak transcription	A549	lung
41	chr2:33800200-33802400	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr2:33800800-33809800	Weak transcription	NHEK	skin

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