Variant report

Variant	rs7571269
Chromosome Location	chr2:33797271-33797272
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10188817	0.82[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs10198451	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10201046	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1046038	0.85[ASN][1000 genomes]
rs13388224	0.84[ASN][1000 genomes]
rs13391166	0.86[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs13393407	0.80[ASN][1000 genomes]
rs13418410	0.84[ASN][1000 genomes]
rs1375194	0.81[JPT][hapmap]
rs17657783	0.82[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2044644	0.86[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4670206	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4670209	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4670728	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4670735	0.84[ASN][1000 genomes]
rs6722536	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs935625	0.91[JPT][hapmap];0.80[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7571269	FAM98A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:33757200-33809800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:33762200-33809800	Weak transcription	Aorta	Aorta
3	chr2:33766800-33809800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:33776000-33809800	Weak transcription	Pancreas	Pancrea
5	chr2:33778400-33806400	Weak transcription	Primary T cells from cord blood	blood
6	chr2:33778400-33807600	Weak transcription	NH-A	brain
7	chr2:33778400-33808600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr2:33780000-33808600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr2:33780400-33808600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr2:33780400-33809200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:33780800-33797400	Weak transcription	Brain Angular Gyrus	brain
12	chr2:33781200-33809800	Weak transcription	Gastric	stomach
13	chr2:33782000-33807000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr2:33784000-33809800	Weak transcription	Right Ventricle	heart
15	chr2:33784000-33810000	Weak transcription	Fetal Intestine Small	intestine
16	chr2:33784200-33809800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:33784600-33808400	Weak transcription	Fetal Muscle Leg	muscle
18	chr2:33786000-33808600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:33786400-33798400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr2:33786400-33808800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr2:33788200-33802000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr2:33788200-33805400	Weak transcription	Placenta	Placenta
23	chr2:33788400-33808800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr2:33788600-33799000	Weak transcription	Brain Substantia Nigra	brain
25	chr2:33788600-33802000	Weak transcription	Brain Anterior Caudate	brain
26	chr2:33788600-33807400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr2:33788600-33808600	Weak transcription	Psoas Muscle	Psoas
28	chr2:33789400-33809400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr2:33789600-33797400	Weak transcription	Brain Hippocampus Middle	brain
30	chr2:33789600-33808600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr2:33790800-33808600	Weak transcription	Adipose Nuclei	Adipose
32	chr2:33791000-33806800	Weak transcription	Primary B cells from cord blood	blood
33	chr2:33791400-33808600	Weak transcription	Left Ventricle	heart
34	chr2:33793000-33802800	Weak transcription	Stomach Smooth Muscle	stomach
35	chr2:33794600-33807000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr2:33796200-33807000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr2:33797000-33797400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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