Variant report

Variant	rs62166163
Chromosome Location	chr2:76523255-76523256
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10519328	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11126513	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12464573	0.86[ASN][1000 genomes]
rs1405335	0.81[AMR][1000 genomes]
rs1405337	0.81[AMR][1000 genomes]
rs17012460	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4853216	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4853218	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62166161	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62166162	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62166164	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62166166	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6547066	0.83[AMR][1000 genomes]
rs6547067	0.81[AMR][1000 genomes]
rs7419909	0.83[AMR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:76520600-76524800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:76521400-76523600	Weak transcription	Brain Anterior Caudate	brain
3	chr2:76522400-76523800	Enhancers	Brain Cingulate Gyrus	brain
4	chr2:76522800-76525400	Weak transcription	Fetal Heart	heart
5	chr2:76523000-76523400	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:76523000-76523600	Enhancers	Brain Germinal Matrix	brain
7	chr2:76523000-76524000	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr2:76523200-76523800	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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