Variant report

Variant	rs62181526
Chromosome Location	chr2:180616128-180616129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:179660873..179661497-chr2:180616030..180616590,2	MCF-7	breast:
2	chr2:180083456..180084009-chr2:180615655..180616482,2	MCF-7	breast:
3	chr2:180286529..180287408-chr2:180615709..180616559,2	K562	blood:
4	chr2:180275349..180276229-chr2:180615641..180616550,4	MCF-7	breast:
5	chr2:180286493..180287715-chr2:180615528..180616540,6	MCF-7	breast:
6	chr2:179660477..179661475-chr2:180615670..180616601,3	K562	blood:
7	chr2:180286906..180287502-chr2:180615695..180616530,2	MCF-7	breast:
8	chr2:180275386..180276286-chr2:180615603..180616556,3	K562	blood:

No data

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10930884	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17773184	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17773255	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17773308	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17773504	1.00[ASN][1000 genomes]
rs17773667	0.83[AFR][1000 genomes]
rs17773899	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17773927	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17774379	1.00[ASN][1000 genomes]
rs17824564	1.00[ASN][1000 genomes]
rs17824691	1.00[ASN][1000 genomes]
rs17824733	1.00[ASN][1000 genomes]
rs17824913	1.00[ASN][1000 genomes]
rs17824948	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17825041	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17825125	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17825317	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17825747	1.00[ASN][1000 genomes]
rs356417	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56342697	1.00[ASN][1000 genomes]
rs59847923	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60243803	1.00[ASN][1000 genomes]
rs62180392	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62181524	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6718670	1.00[ASN][1000 genomes]
rs73046887	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73046894	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73046901	1.00[ASN][1000 genomes]
rs73048517	1.00[ASN][1000 genomes]
rs7557892	1.00[ASN][1000 genomes]
rs7581371	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180610800-180621200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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