Variant report

Variant	rs17825317
Chromosome Location	chr2:180635658-180635659
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:180628206..180630948-chr2:180635078..180637285,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10930884	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10930885	1.00[CHB][hapmap]
rs1385970	1.00[CHB][hapmap]
rs1486232	1.00[CHB][hapmap]
rs165383	1.00[CHB][hapmap]
rs16867038	1.00[CHB][hapmap]
rs16867040	1.00[CHB][hapmap]
rs16867042	1.00[CHB][hapmap]
rs17772985	1.00[CHB][hapmap]
rs17773184	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17773255	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17773308	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17773504	1.00[CHB][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs17773667	1.00[CHB][hapmap]
rs17773899	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17773927	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17774379	1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17775571	1.00[CHB][hapmap]
rs17775913	1.00[CHB][hapmap]
rs17775991	1.00[CHB][hapmap]
rs17776109	1.00[CHB][hapmap]
rs17823821	1.00[CHB][hapmap];0.85[YRI][hapmap]
rs17823881	1.00[CHB][hapmap]
rs17824301	1.00[CHB][hapmap]
rs17824564	1.00[CHB][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs17824691	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17824733	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17824871	1.00[CHB][hapmap]
rs17824913	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17824948	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17825041	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17825125	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17825747	1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17831917	1.00[CHB][hapmap]
rs187744	1.00[CHB][hapmap]
rs2126424	1.00[CHB][hapmap]
rs2367798	1.00[CHB][hapmap]
rs2367800	1.00[CHB][hapmap];0.85[YRI][hapmap]
rs356417	0.83[EUR][1000 genomes]
rs56342697	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56837904	0.86[AFR][1000 genomes]
rs59847923	1.00[ASN][1000 genomes]
rs60243803	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62180392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62181524	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62181526	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6433805	1.00[CHB][hapmap]
rs6433806	1.00[CHB][hapmap]
rs6433808	1.00[CHB][hapmap]
rs6718670	1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6727665	1.00[CHB][hapmap]
rs6738348	1.00[CHB][hapmap]
rs73046887	1.00[ASN][1000 genomes]
rs73046894	1.00[ASN][1000 genomes]
rs73046901	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73048517	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7557892	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7570042	1.00[CHB][hapmap]
rs7574741	1.00[CHB][hapmap]
rs7581371	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7602719	1.00[CHB][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428731	chr2:180629389-180805171	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180633800-180637200	Weak transcription	Fetal Lung	lung
2	chr2:180634400-180638400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr2:180634400-180638800	Weak transcription	Liver	Liver
4	chr2:180634600-180644000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:180635000-180635800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:180635000-180643000	Weak transcription	Right Atrium	heart
7	chr2:180635200-180636200	Weak transcription	Fetal Heart	heart

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