Variant report

Variant	rs17775571
Chromosome Location	chr2:180707168-180707169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:180697026..180699896-chr2:180705650..180708149,2	MCF-7	breast:
2	chr2:180707046..180707794-chr2:180801109..180802085,4	MCF-7	breast:
3	chr2:180706168..180708341-chr2:180711093..180713264,3	K562	blood:
4	chr2:180707129..180707861-chr2:180763387..180764295,2	K562	blood:
5	chr2:180706972..180707878-chr2:180763320..180764150,2	MCF-7	breast:
6	chr2:180706968..180707872-chr2:180831565..180832499,2	MCF-7	breast:
7	chr2:180707163..180707821-chr2:180941894..180942731,3	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10930884	1.00[CHB][hapmap]
rs10930885	1.00[CHB][hapmap]
rs1385970	1.00[CHB][hapmap]
rs1480701	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1486232	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs165383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16867038	0.87[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16867040	0.87[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16867042	1.00[CHB][hapmap];0.96[EUR][1000 genomes]
rs17772985	1.00[CHB][hapmap]
rs17773184	1.00[CHB][hapmap]
rs17773255	1.00[CHB][hapmap]
rs17773308	1.00[CHB][hapmap]
rs17773504	1.00[CHB][hapmap]
rs17773667	1.00[CHB][hapmap]
rs17773899	1.00[CHB][hapmap]
rs17773927	1.00[CHB][hapmap]
rs17774379	1.00[CHB][hapmap]
rs17775913	1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17775991	0.87[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17776109	1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17823821	1.00[CHB][hapmap]
rs17823881	1.00[CHB][hapmap]
rs17824301	1.00[CHB][hapmap]
rs17824564	1.00[CHB][hapmap]
rs17824691	1.00[CHB][hapmap]
rs17824733	1.00[CHB][hapmap]
rs17824871	1.00[CHB][hapmap]
rs17824913	1.00[CHB][hapmap]
rs17824948	1.00[CHB][hapmap]
rs17825041	1.00[CHB][hapmap]
rs17825125	1.00[CHB][hapmap]
rs17825317	1.00[CHB][hapmap]
rs17825747	1.00[CHB][hapmap]
rs17831624	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17831917	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs187744	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2126424	1.00[CHB][hapmap]
rs2169484	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2367798	1.00[CHB][hapmap]
rs2367800	1.00[CHB][hapmap]
rs34879134	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55781930	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59351466	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59429726	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59777414	1.00[ASN][1000 genomes]
rs6433805	1.00[CHB][hapmap]
rs6433806	1.00[CHB][hapmap]
rs6433808	1.00[CHB][hapmap]
rs6718670	1.00[CHB][hapmap]
rs6727665	1.00[CHB][hapmap]
rs6738348	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6756801	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73973749	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73973764	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7557892	1.00[CHB][hapmap]
rs7570042	1.00[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7574741	1.00[CHB][hapmap]
rs7581371	1.00[CHB][hapmap]
rs7602719	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428731	chr2:180629389-180805171	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv875472	chr2:180696414-181024926	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv875473	chr2:180696414-181055597	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180703400-180707400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:180706400-180707400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:180706800-180724800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:180707000-180707200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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