Variant report

Variant	rs73973749
Chromosome Location	chr2:180669764-180669765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1480701	0.88[EUR][1000 genomes]
rs16867038	0.88[EUR][1000 genomes]
rs16867040	0.88[EUR][1000 genomes]
rs16867042	0.86[EUR][1000 genomes]
rs17775571	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17775913	0.88[EUR][1000 genomes]
rs17775991	0.88[EUR][1000 genomes]
rs17776109	0.88[EUR][1000 genomes]
rs17831624	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17831917	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2169484	0.88[EUR][1000 genomes]
rs34879134	0.84[EUR][1000 genomes]
rs55781930	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59351466	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59429726	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60521347	1.00[ASN][1000 genomes]
rs6756801	0.88[EUR][1000 genomes]
rs73973764	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7570042	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428731	chr2:180629389-180805171	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180669400-180670000	Enhancers	Right Atrium	heart
2	chr2:180669600-180670000	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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