Variant report

Variant	rs17831917
Chromosome Location	chr2:180691091-180691092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10930884	1.00[CHB][hapmap]
rs10930885	1.00[CHB][hapmap]
rs1385970	1.00[CHB][hapmap]
rs1480701	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1486232	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs165383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16867038	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16867040	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16867042	1.00[CHB][hapmap];0.91[EUR][1000 genomes]
rs17772985	1.00[CHB][hapmap]
rs17773184	1.00[CHB][hapmap]
rs17773255	1.00[CHB][hapmap]
rs17773308	1.00[CHB][hapmap]
rs17773504	1.00[CHB][hapmap]
rs17773667	1.00[CHB][hapmap]
rs17773899	1.00[CHB][hapmap]
rs17773927	1.00[CHB][hapmap]
rs17774379	1.00[CHB][hapmap]
rs17775571	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17775913	1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17775991	0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17776109	1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17823821	1.00[CHB][hapmap]
rs17823881	1.00[CHB][hapmap]
rs17824301	1.00[CHB][hapmap]
rs17824564	1.00[CHB][hapmap]
rs17824691	1.00[CHB][hapmap]
rs17824733	1.00[CHB][hapmap]
rs17824871	1.00[CHB][hapmap]
rs17824913	1.00[CHB][hapmap]
rs17824948	1.00[CHB][hapmap]
rs17825041	1.00[CHB][hapmap]
rs17825125	1.00[CHB][hapmap]
rs17825317	1.00[CHB][hapmap]
rs17825747	1.00[CHB][hapmap]
rs17831624	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs187744	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2126424	1.00[CHB][hapmap]
rs2169484	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2367798	1.00[CHB][hapmap]
rs2367800	1.00[CHB][hapmap]
rs34879134	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55781930	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59351466	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59429726	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59777414	1.00[ASN][1000 genomes]
rs60663343	0.80[AFR][1000 genomes]
rs6433805	1.00[CHB][hapmap]
rs6433806	1.00[CHB][hapmap]
rs6433808	1.00[CHB][hapmap]
rs6718670	1.00[CHB][hapmap]
rs6727665	1.00[CHB][hapmap]
rs6738348	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6756801	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73973749	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73973764	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7557892	1.00[CHB][hapmap]
rs7570042	1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7574741	1.00[CHB][hapmap]
rs7581371	1.00[CHB][hapmap]
rs7602719	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv428731	chr2:180629389-180805171	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180688800-180691800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:180690000-180692000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr2:180690200-180691400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr2:180690200-180691800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:180690400-180691200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:180690400-180691200	Enhancers	H9 Cell Line	embryonic stem cell
7	chr2:180690400-180691400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:180690400-180691400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:180690600-180691200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr2:180690600-180691200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr2:180690600-180692000	Enhancers	Fetal Heart	heart
12	chr2:180691000-180691400	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links