Variant report
| Variant | rs1385970 |
|---|---|
| Chromosome Location | chr2:180671706-180671707 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:180664595..180667266-chr2:180669827..180672570,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:53)
| rs_ID | r2[population] |
|---|---|
| rs10930884 | 1.00[CHB][hapmap] |
| rs10930885 | 1.00[CHB][hapmap] |
| rs1486232 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes] |
| rs165383 | 1.00[CHB][hapmap] |
| rs16867038 | 1.00[CHB][hapmap] |
| rs16867040 | 1.00[CHB][hapmap] |
| rs16867042 | 1.00[CHB][hapmap] |
| rs17772985 | 1.00[CHB][hapmap] |
| rs17773184 | 1.00[CHB][hapmap] |
| rs17773255 | 1.00[CHB][hapmap] |
| rs17773308 | 1.00[CHB][hapmap] |
| rs17773504 | 1.00[CHB][hapmap] |
| rs17773667 | 1.00[CHB][hapmap] |
| rs17773899 | 1.00[CHB][hapmap] |
| rs17773927 | 1.00[CHB][hapmap] |
| rs17774379 | 1.00[CHB][hapmap] |
| rs17775571 | 1.00[CHB][hapmap] |
| rs17775913 | 1.00[CHB][hapmap] |
| rs17775991 | 1.00[CHB][hapmap] |
| rs17776109 | 1.00[CHB][hapmap] |
| rs17823821 | 1.00[CHB][hapmap] |
| rs17823881 | 1.00[CHB][hapmap] |
| rs17824301 | 1.00[CHB][hapmap] |
| rs17824564 | 1.00[CHB][hapmap] |
| rs17824691 | 1.00[CHB][hapmap] |
| rs17824733 | 1.00[CHB][hapmap] |
| rs17824871 | 1.00[CHB][hapmap] |
| rs17824913 | 1.00[CHB][hapmap] |
| rs17824948 | 1.00[CHB][hapmap] |
| rs17825041 | 1.00[CHB][hapmap] |
| rs17825125 | 1.00[CHB][hapmap] |
| rs17825317 | 1.00[CHB][hapmap] |
| rs17825747 | 1.00[CHB][hapmap] |
| rs17831624 | 1.00[ASN][1000 genomes] |
| rs17831917 | 1.00[CHB][hapmap] |
| rs187744 | 1.00[CHB][hapmap] |
| rs2126424 | 1.00[CHB][hapmap] |
| rs2367798 | 1.00[CHB][hapmap] |
| rs2367800 | 1.00[CHB][hapmap] |
| rs59777414 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs60521347 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6433805 | 1.00[CHB][hapmap] |
| rs6433806 | 1.00[CHB][hapmap] |
| rs6433808 | 1.00[CHB][hapmap] |
| rs6718670 | 1.00[CHB][hapmap] |
| rs6727665 | 1.00[CHB][hapmap] |
| rs6738348 | 1.00[CHB][hapmap] |
| rs73973749 | 1.00[ASN][1000 genomes] |
| rs7557892 | 1.00[CHB][hapmap] |
| rs7570042 | 1.00[CHB][hapmap] |
| rs7574741 | 1.00[CHB][hapmap] |
| rs7581371 | 1.00[CHB][hapmap] |
| rs7602719 | 1.00[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1002305 | chr2:180568558-180812846 | Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv428731 | chr2:180629389-180805171 | Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
