Variant report

Variant	rs62182610
Chromosome Location	chr2:213102644-213102645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10187913	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10200047	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497962	1.00[ASN][1000 genomes]
rs10497966	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11885830	1.00[ASN][1000 genomes]
rs12151478	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12151481	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389250	1.00[ASN][1000 genomes]
rs13426487	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1402770	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16848108	1.00[ASN][1000 genomes]
rs16848124	1.00[ASN][1000 genomes]
rs17345976	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17346615	1.00[ASN][1000 genomes]
rs17417904	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17417981	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17418016	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17418292	1.00[ASN][1000 genomes]
rs1915744	1.00[ASN][1000 genomes]
rs1915745	1.00[ASN][1000 genomes]
rs2204070	1.00[ASN][1000 genomes]
rs28539084	1.00[ASN][1000 genomes]
rs55786007	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56388911	1.00[ASN][1000 genomes]
rs56395249	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56815773	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182606	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182607	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182608	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182615	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182616	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182618	1.00[ASN][1000 genomes]
rs62182619	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182621	1.00[ASN][1000 genomes]
rs62182622	1.00[ASN][1000 genomes]
rs62182623	1.00[ASN][1000 genomes]
rs6731885	1.00[ASN][1000 genomes]
rs73062443	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7587246	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1001718	chr2:213047033-213155985	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004823	chr2:213052804-213181263	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv536138	chr2:213052804-213181263	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1006051	chr2:213052804-213273642	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv875807	chr2:213054058-213103721	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv584346	chr2:213067749-213258622	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv2763085	chr2:213073428-213107281	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv998615	chr2:213081893-213202228	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	nsv536139	chr2:213081893-213202228	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	nsv1007853	chr2:213087904-213134413	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213093600-213107400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:213101800-213103000	Enhancers	HepG2	liver
3	chr2:213102000-213103200	Enhancers	H9 Cell Line	embryonic stem cell
4	chr2:213102000-213103200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:213102000-213103200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr2:213102000-213103200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:213102000-213103600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:213102200-213102800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr2:213102200-213103200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr2:213102200-213103200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr2:213102200-213103200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr2:213102200-213103200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:213102200-213103200	Enhancers	Fetal Heart	heart
14	chr2:213102200-213103200	Enhancers	Gastric	stomach
15	chr2:213102200-213103200	Enhancers	Left Ventricle	heart
16	chr2:213102400-213103000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr2:213102400-213103000	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr2:213102400-213103000	Enhancers	Right Atrium	heart
19	chr2:213102600-213103200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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