Variant report

Variant	rs13426487
Chromosome Location	chr2:213116181-213116182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:213108853..213110992-chr2:213114605..213117467,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10183628	0.80[YRI][hapmap]
rs10187913	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10200047	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497962	1.00[ASN][1000 genomes]
rs10497966	0.95[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497969	0.88[YRI][hapmap]
rs11885830	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12151478	0.81[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12151481	0.84[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389250	1.00[ASN][1000 genomes]
rs1402770	0.81[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16847879	0.81[CEU][hapmap]
rs16847988	0.85[YRI][hapmap]
rs16848065	0.88[YRI][hapmap]
rs16848108	1.00[ASN][1000 genomes]
rs16848124	1.00[ASN][1000 genomes]
rs17345520	0.81[CEU][hapmap]
rs17345976	0.90[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17346615	1.00[ASN][1000 genomes]
rs17417113	0.80[CEU][hapmap]
rs17417461	0.87[CEU][hapmap]
rs17417904	0.90[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17417981	0.95[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17418016	0.95[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17418292	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1915744	1.00[ASN][1000 genomes]
rs1915745	1.00[ASN][1000 genomes]
rs2204070	1.00[ASN][1000 genomes]
rs28539084	1.00[ASN][1000 genomes]
rs55786007	1.00[ASN][1000 genomes]
rs56388911	1.00[ASN][1000 genomes]
rs56395249	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56815773	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182606	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182607	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182608	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182609	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182610	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182611	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182612	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182615	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182616	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182618	1.00[ASN][1000 genomes]
rs62182619	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182621	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182622	1.00[ASN][1000 genomes]
rs62182623	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182624	0.81[EUR][1000 genomes]
rs6731885	1.00[ASN][1000 genomes]
rs73062443	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7587246	0.86[CEU][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1001718	chr2:213047033-213155985	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004823	chr2:213052804-213181263	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv536138	chr2:213052804-213181263	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1006051	chr2:213052804-213273642	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv584346	chr2:213067749-213258622	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv998615	chr2:213081893-213202228	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	nsv536139	chr2:213081893-213202228	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	nsv1007853	chr2:213087904-213134413	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	nsv460074	chr2:213114645-213151230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	nsv584347	chr2:213114645-213151230	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	nsv834526	chr2:213114901-213237146	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	nsv834527	chr2:213115966-213334308	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213107800-213134000	Weak transcription	Aorta	Aorta
2	chr2:213114200-213116600	Weak transcription	Fetal Heart	heart
3	chr2:213114600-213130400	Weak transcription	Brain Hippocampus Middle	brain
4	chr2:213115200-213119000	Weak transcription	Brain Angular Gyrus	brain
5	chr2:213115400-213121800	Weak transcription	Brain Substantia Nigra	brain
6	chr2:213115400-213134000	Weak transcription	Brain Cingulate Gyrus	brain

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