Variant report

Variant	rs1915744
Chromosome Location	chr2:213044862-213044863
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:213040589..213042469-chr2:213044836..213047782,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10187913	1.00[ASN][1000 genomes]
rs10200047	1.00[ASN][1000 genomes]
rs10497962	0.95[CEU][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497966	1.00[ASN][1000 genomes]
rs11885830	1.00[ASN][1000 genomes]
rs12151478	1.00[ASN][1000 genomes]
rs12151481	1.00[ASN][1000 genomes]
rs13389250	1.00[ASN][1000 genomes]
rs13426487	1.00[ASN][1000 genomes]
rs1402770	1.00[ASN][1000 genomes]
rs16847879	0.90[CEU][hapmap]
rs16848108	1.00[ASN][1000 genomes]
rs16848124	1.00[ASN][1000 genomes]
rs17344929	0.90[CEU][hapmap]
rs17345520	0.90[CEU][hapmap]
rs17345976	1.00[ASN][1000 genomes]
rs17346615	1.00[ASN][1000 genomes]
rs17416834	0.95[CEU][hapmap]
rs17416848	0.90[CEU][hapmap]
rs17417113	0.90[CEU][hapmap]
rs17417461	0.87[CEU][hapmap]
rs17417904	1.00[ASN][1000 genomes]
rs17417981	1.00[ASN][1000 genomes]
rs17418016	1.00[ASN][1000 genomes]
rs17418292	1.00[ASN][1000 genomes]
rs1915745	0.95[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2204070	0.95[CEU][hapmap];0.92[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28539084	1.00[ASN][1000 genomes]
rs4569416	0.86[CEU][hapmap]
rs55786007	1.00[ASN][1000 genomes]
rs56388911	1.00[ASN][1000 genomes]
rs56395249	1.00[ASN][1000 genomes]
rs56815773	1.00[ASN][1000 genomes]
rs62182606	1.00[ASN][1000 genomes]
rs62182607	1.00[ASN][1000 genomes]
rs62182608	1.00[ASN][1000 genomes]
rs62182609	1.00[ASN][1000 genomes]
rs62182610	1.00[ASN][1000 genomes]
rs62182611	1.00[ASN][1000 genomes]
rs62182612	1.00[ASN][1000 genomes]
rs62182615	1.00[ASN][1000 genomes]
rs62182616	1.00[ASN][1000 genomes]
rs62182618	1.00[ASN][1000 genomes]
rs62182619	1.00[ASN][1000 genomes]
rs62182621	1.00[ASN][1000 genomes]
rs62182622	1.00[ASN][1000 genomes]
rs62182623	1.00[ASN][1000 genomes]
rs6731885	1.00[ASN][1000 genomes]
rs73062443	1.00[ASN][1000 genomes]
rs7587246	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213041600-213045800	Weak transcription	Fetal Heart	heart

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