Variant report
| Variant | rs17416834 |
|---|---|
| Chromosome Location | chr2:213054593-213054594 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:50)
| rs_ID | r2[population] |
|---|---|
| rs10187913 | 1.00[ASN][1000 genomes] |
| rs10200047 | 1.00[ASN][1000 genomes] |
| rs10497962 | 1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10497966 | 1.00[ASN][1000 genomes] |
| rs11885830 | 1.00[ASN][1000 genomes] |
| rs12151478 | 1.00[ASN][1000 genomes] |
| rs12151481 | 1.00[ASN][1000 genomes] |
| rs13389250 | 1.00[ASN][1000 genomes] |
| rs13426487 | 1.00[ASN][1000 genomes] |
| rs1402770 | 1.00[ASN][1000 genomes] |
| rs16847879 | 0.90[CEU][hapmap] |
| rs16848108 | 1.00[ASN][1000 genomes] |
| rs16848124 | 1.00[ASN][1000 genomes] |
| rs17344929 | 0.95[CEU][hapmap] |
| rs17345520 | 0.90[CEU][hapmap] |
| rs17345976 | 0.81[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs17346615 | 1.00[ASN][1000 genomes] |
| rs17416848 | 0.95[CEU][hapmap] |
| rs17417113 | 0.90[CEU][hapmap] |
| rs17417461 | 0.87[CEU][hapmap] |
| rs17417904 | 0.81[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs17417981 | 1.00[ASN][1000 genomes] |
| rs17418016 | 1.00[ASN][1000 genomes] |
| rs17418292 | 1.00[ASN][1000 genomes] |
| rs1915744 | 0.95[CEU][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1915745 | 1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2204070 | 1.00[CEU][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28539084 | 1.00[ASN][1000 genomes] |
| rs4569416 | 0.86[CEU][hapmap] |
| rs55786007 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56388911 | 1.00[ASN][1000 genomes] |
| rs56395249 | 1.00[ASN][1000 genomes] |
| rs56815773 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62182606 | 1.00[ASN][1000 genomes] |
| rs62182607 | 1.00[ASN][1000 genomes] |
| rs62182608 | 1.00[ASN][1000 genomes] |
| rs62182609 | 1.00[ASN][1000 genomes] |
| rs62182610 | 1.00[ASN][1000 genomes] |
| rs62182611 | 1.00[ASN][1000 genomes] |
| rs62182612 | 1.00[ASN][1000 genomes] |
| rs62182615 | 1.00[ASN][1000 genomes] |
| rs62182616 | 1.00[ASN][1000 genomes] |
| rs62182618 | 1.00[ASN][1000 genomes] |
| rs62182619 | 1.00[ASN][1000 genomes] |
| rs62182621 | 1.00[ASN][1000 genomes] |
| rs62182622 | 1.00[ASN][1000 genomes] |
| rs62182623 | 1.00[ASN][1000 genomes] |
| rs6731885 | 1.00[ASN][1000 genomes] |
| rs73062443 | 1.00[ASN][1000 genomes] |
| rs7587246 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011572 | chr2:212840066-213152279 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv875805 | chr2:212891401-213164837 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv875806 | chr2:212997024-213211067 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1001718 | chr2:213047033-213155985 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1004823 | chr2:213052804-213181263 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv536138 | chr2:213052804-213181263 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv1006051 | chr2:213052804-213273642 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 8 | nsv875807 | chr2:213054058-213103721 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
