Variant report

Variant	rs16847879
Chromosome Location	chr2:213067535-213067536
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10187913	0.86[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10200047	0.85[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497962	0.90[CEU][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10497966	0.85[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10932426	0.81[CEU][hapmap]
rs11885830	1.00[ASN][1000 genomes]
rs12151478	1.00[ASN][1000 genomes]
rs12151481	1.00[ASN][1000 genomes]
rs12694268	0.82[CEU][hapmap]
rs13389250	1.00[ASN][1000 genomes]
rs13426487	0.81[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1402770	1.00[ASN][1000 genomes]
rs16848108	0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs16848124	0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs17344929	0.85[CEU][hapmap]
rs17345520	1.00[CEU][hapmap]
rs17345976	0.81[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17346615	1.00[ASN][1000 genomes]
rs17416834	0.90[CEU][hapmap]
rs17416848	0.90[CEU][hapmap]
rs17417113	1.00[CEU][hapmap]
rs17417461	1.00[CEU][hapmap]
rs17417904	0.81[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17417981	0.86[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17418016	0.85[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17418292	0.80[CEU][hapmap];1.00[ASN][1000 genomes]
rs1915744	0.90[CEU][hapmap];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1915745	0.90[CEU][hapmap];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2204070	0.90[CEU][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28539084	1.00[ASN][1000 genomes]
rs4145960	0.86[CEU][hapmap]
rs4569416	0.95[CEU][hapmap];1.00[YRI][hapmap]
rs55786007	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56388911	1.00[ASN][1000 genomes]
rs56395249	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56815773	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182606	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182607	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182608	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182609	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182610	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182611	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182612	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182615	1.00[ASN][1000 genomes]
rs62182616	1.00[ASN][1000 genomes]
rs62182618	1.00[ASN][1000 genomes]
rs62182619	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182621	1.00[ASN][1000 genomes]
rs62182622	1.00[ASN][1000 genomes]
rs62182623	1.00[ASN][1000 genomes]
rs6731885	1.00[ASN][1000 genomes]
rs73062443	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7587246	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1001718	chr2:213047033-213155985	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004823	chr2:213052804-213181263	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv536138	chr2:213052804-213181263	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1006051	chr2:213052804-213273642	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv875807	chr2:213054058-213103721	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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