Variant report

Variant	rs17416848
Chromosome Location	chr2:213054900-213054901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10187913	1.00[ASN][1000 genomes]
rs10190345	0.81[CEU][hapmap]
rs10200047	1.00[ASN][1000 genomes]
rs10497962	0.95[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10497966	1.00[ASN][1000 genomes]
rs10932426	0.85[CEU][hapmap]
rs11691783	0.81[CEU][hapmap]
rs11885830	1.00[ASN][1000 genomes]
rs12151478	1.00[ASN][1000 genomes]
rs12151481	1.00[ASN][1000 genomes]
rs12694268	0.85[CEU][hapmap]
rs13389250	1.00[ASN][1000 genomes]
rs13426487	1.00[ASN][1000 genomes]
rs1402770	1.00[ASN][1000 genomes]
rs16847879	0.90[CEU][hapmap]
rs16848108	1.00[ASN][1000 genomes]
rs16848124	1.00[ASN][1000 genomes]
rs17344929	1.00[CEU][hapmap]
rs17345520	0.90[CEU][hapmap]
rs17345976	1.00[ASN][1000 genomes]
rs17346615	1.00[ASN][1000 genomes]
rs17416834	0.95[CEU][hapmap]
rs17417113	0.90[CEU][hapmap]
rs17417461	0.86[CEU][hapmap]
rs17417904	1.00[ASN][1000 genomes]
rs17417981	1.00[ASN][1000 genomes]
rs17418016	1.00[ASN][1000 genomes]
rs17418292	1.00[ASN][1000 genomes]
rs1915744	0.90[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1915745	0.95[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2204070	0.95[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28539084	1.00[ASN][1000 genomes]
rs4145960	0.89[CEU][hapmap]
rs4569416	0.95[CEU][hapmap]
rs55786007	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56388911	1.00[ASN][1000 genomes]
rs56395249	1.00[ASN][1000 genomes]
rs56815773	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182606	1.00[ASN][1000 genomes]
rs62182607	1.00[ASN][1000 genomes]
rs62182608	1.00[ASN][1000 genomes]
rs62182609	1.00[ASN][1000 genomes]
rs62182610	1.00[ASN][1000 genomes]
rs62182611	1.00[ASN][1000 genomes]
rs62182612	1.00[ASN][1000 genomes]
rs62182615	1.00[ASN][1000 genomes]
rs62182616	1.00[ASN][1000 genomes]
rs62182618	1.00[ASN][1000 genomes]
rs62182619	1.00[ASN][1000 genomes]
rs62182621	1.00[ASN][1000 genomes]
rs62182622	1.00[ASN][1000 genomes]
rs62182623	1.00[ASN][1000 genomes]
rs6731885	1.00[ASN][1000 genomes]
rs73062443	1.00[ASN][1000 genomes]
rs7587246	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1001718	chr2:213047033-213155985	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004823	chr2:213052804-213181263	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv536138	chr2:213052804-213181263	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1006051	chr2:213052804-213273642	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv875807	chr2:213054058-213103721	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links