Variant report

Variant	rs11691783
Chromosome Location	chr2:213074862-213074863
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10184205	0.84[CHB][hapmap];0.86[JPT][hapmap];0.88[YRI][hapmap]
rs10190345	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10804203	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs10932424	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs10932426	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10932427	0.92[CHB][hapmap]
rs12468821	0.86[CHB][hapmap];0.86[JPT][hapmap];0.86[YRI][hapmap]
rs12694268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1357139	0.84[CHB][hapmap]
rs1467273	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs1467275	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1474258	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17416848	0.81[CEU][hapmap]
rs17417113	0.82[CEU][hapmap]
rs1879651	0.86[JPT][hapmap]
rs1915743	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs1996762	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4145960	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4145961	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs4569416	0.83[CEU][hapmap]
rs7581884	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7608095	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs939227	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1001718	chr2:213047033-213155985	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004823	chr2:213052804-213181263	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv536138	chr2:213052804-213181263	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1006051	chr2:213052804-213273642	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv875807	chr2:213054058-213103721	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv584346	chr2:213067749-213258622	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv2763085	chr2:213073428-213107281	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11691783	EIF5B	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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