Variant report

Variant	rs1879651
Chromosome Location	chr2:213086150-213086151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10048750	0.85[CHB][hapmap]
rs10048796	0.87[CHB][hapmap]
rs10048819	0.80[CHB][hapmap]
rs10172782	0.84[CHB][hapmap]
rs10184205	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10190345	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs10206443	0.87[CHB][hapmap]
rs1021916	1.00[YRI][hapmap]
rs10804203	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10932424	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10932426	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs10932427	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10932428	0.86[CHB][hapmap]
rs11677623	0.80[CHB][hapmap]
rs11682936	0.80[CHB][hapmap]
rs11691783	0.86[JPT][hapmap]
rs11887771	0.80[CHB][hapmap]
rs12468821	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12694268	0.86[JPT][hapmap]
rs13407289	0.80[CHB][hapmap]
rs13408933	0.80[CHB][hapmap]
rs13427258	0.85[CHB][hapmap]
rs13429136	0.80[CHB][hapmap]
rs13432680	0.80[CHB][hapmap]
rs1357139	0.92[CHB][hapmap]
rs1402764	0.80[CHB][hapmap]
rs1467273	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1467275	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1474258	0.93[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs1546718	0.80[CHB][hapmap]
rs1546719	0.80[CHB][hapmap]
rs1915743	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1915747	0.85[CHB][hapmap]
rs1915748	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1996762	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2062932	1.00[YRI][hapmap]
rs4145960	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs4145961	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs4350692	0.80[CHB][hapmap]
rs4375810	0.80[CHB][hapmap]
rs4638732	0.80[CHB][hapmap]
rs6717146	1.00[YRI][hapmap]
rs7570761	0.80[CHB][hapmap];1.00[YRI][hapmap]
rs7577482	1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs7580255	0.80[CHB][hapmap];1.00[YRI][hapmap]
rs7581884	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7583388	0.80[CHB][hapmap];1.00[YRI][hapmap]
rs7608095	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs7609230	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9288446	0.80[CHB][hapmap]
rs9288447	0.86[CHB][hapmap]
rs9288449	0.87[CHB][hapmap]
rs939227	0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs979042	0.85[CHB][hapmap]
rs9973520	0.80[CHB][hapmap]
rs9973523	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1001718	chr2:213047033-213155985	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1004823	chr2:213052804-213181263	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv536138	chr2:213052804-213181263	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1006051	chr2:213052804-213273642	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv875807	chr2:213054058-213103721	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv584346	chr2:213067749-213258622	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv2763085	chr2:213073428-213107281	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv998615	chr2:213081893-213202228	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	nsv536139	chr2:213081893-213202228	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links