Variant report

Variant	rs1915743
Chromosome Location	chr2:213045046-213045047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:213040589..213042469-chr2:213044836..213047782,2	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10048673	0.86[CHB][hapmap]
rs10048796	0.82[CHB][hapmap]
rs10166172	0.86[CHB][hapmap]
rs10184205	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10190345	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10196229	0.86[CHB][hapmap]
rs10206443	0.81[CHB][hapmap]
rs1021916	1.00[YRI][hapmap]
rs10804203	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10932424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10932426	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10932427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10932428	0.81[CHB][hapmap]
rs11677623	0.88[CHB][hapmap]
rs11691783	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs12468821	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12622947	0.86[CHB][hapmap]
rs12694268	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs13391312	0.86[CHB][hapmap]
rs13407289	0.88[CHB][hapmap]
rs13416059	0.86[CHB][hapmap]
rs13427258	0.85[CHB][hapmap]
rs13432680	0.88[CHB][hapmap]
rs1357139	1.00[CHB][hapmap]
rs1402769	0.86[CHB][hapmap]
rs1467273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1467275	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1474258	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs1521637	1.00[CEU][hapmap]
rs1521649	0.86[CHB][hapmap]
rs1521659	0.87[CHB][hapmap]
rs1568516	1.00[CEU][hapmap]
rs16847874	1.00[CEU][hapmap]
rs16848072	1.00[CEU][hapmap]
rs16848106	1.00[CEU][hapmap]
rs16848142	1.00[CEU][hapmap]
rs16848151	1.00[CEU][hapmap]
rs17346524	1.00[CEU][hapmap]
rs17346678	1.00[CEU][hapmap]
rs17346733	1.00[CEU][hapmap]
rs17417710	1.00[CEU][hapmap]
rs17418160	1.00[CEU][hapmap]
rs17418591	1.00[CEU][hapmap]
rs17418884	1.00[CEU][hapmap]
rs17419114	1.00[CEU][hapmap]
rs1879651	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1915748	0.86[CHB][hapmap];1.00[YRI][hapmap]
rs1996762	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2049180	0.86[CHB][hapmap]
rs2062932	1.00[YRI][hapmap]
rs2090862	0.86[CHB][hapmap]
rs2103001	0.86[CHB][hapmap]
rs2371569	1.00[CEU][hapmap]
rs4145960	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4145961	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6717146	1.00[YRI][hapmap]
rs6718075	0.80[CHB][hapmap]
rs7570761	1.00[YRI][hapmap]
rs7572084	1.00[CEU][hapmap]
rs7572366	1.00[CEU][hapmap]
rs7572462	1.00[CEU][hapmap]
rs7577482	1.00[YRI][hapmap]
rs7580255	1.00[YRI][hapmap]
rs7581884	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7583388	1.00[YRI][hapmap]
rs7586610	1.00[CEU][hapmap]
rs7608095	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs9288446	0.88[CHB][hapmap]
rs9288449	0.82[CHB][hapmap]
rs939227	0.93[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs9653257	0.86[CHB][hapmap]
rs9973372	0.87[CHB][hapmap]
rs9973520	0.88[CHB][hapmap]
rs9973523	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011572	chr2:212840066-213152279	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv875805	chr2:212891401-213164837	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv875806	chr2:212997024-213211067	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213041600-213045800	Weak transcription	Fetal Heart	heart

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