Variant report
| Variant | rs10190345 |
|---|---|
| Chromosome Location | chr2:213074811-213074812 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:48)
| rs_ID | r2[population] |
|---|---|
| rs10048673 | 0.86[CHB][hapmap] |
| rs10048796 | 0.81[CHB][hapmap] |
| rs10166172 | 0.86[CHB][hapmap] |
| rs10184205 | 1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap] |
| rs10196229 | 0.86[CHB][hapmap] |
| rs10206443 | 0.81[CHB][hapmap] |
| rs10804203 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs10932424 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs10932426 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs10932427 | 1.00[CHB][hapmap] |
| rs11677623 | 0.87[CHB][hapmap] |
| rs11691783 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs12468821 | 1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[YRI][hapmap] |
| rs12622947 | 0.86[CHB][hapmap] |
| rs12694268 | 1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap] |
| rs13391312 | 0.86[CHB][hapmap] |
| rs13407289 | 0.87[CHB][hapmap] |
| rs13416059 | 0.86[CHB][hapmap] |
| rs13427258 | 0.85[CHB][hapmap] |
| rs13432680 | 0.87[CHB][hapmap] |
| rs1357139 | 1.00[CHB][hapmap] |
| rs1402769 | 0.85[CHB][hapmap] |
| rs1467273 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs1467275 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs1474258 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1521649 | 0.85[CHB][hapmap] |
| rs1521659 | 0.87[CHB][hapmap] |
| rs17416848 | 0.81[CEU][hapmap] |
| rs17417113 | 0.82[CEU][hapmap] |
| rs1879651 | 0.93[CHB][hapmap];0.86[JPT][hapmap] |
| rs1915743 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs1915748 | 0.86[CHB][hapmap] |
| rs1996762 | 0.93[CHB][hapmap];0.86[JPT][hapmap] |
| rs2049180 | 0.86[CHB][hapmap] |
| rs2090862 | 0.86[CHB][hapmap] |
| rs2103001 | 0.86[CHB][hapmap] |
| rs4145960 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs4145961 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap] |
| rs4569416 | 0.83[CEU][hapmap] |
| rs7581884 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
| rs7608095 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs9288446 | 0.87[CHB][hapmap] |
| rs9288449 | 0.81[CHB][hapmap] |
| rs939227 | 0.93[CHB][hapmap];1.00[JPT][hapmap] |
| rs9653257 | 0.86[CHB][hapmap] |
| rs9973372 | 0.87[CHB][hapmap] |
| rs9973520 | 0.87[CHB][hapmap] |
| rs9973523 | 0.87[CHB][hapmap] |
Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011572 | chr2:212840066-213152279 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv875805 | chr2:212891401-213164837 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv875806 | chr2:212997024-213211067 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1001718 | chr2:213047033-213155985 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1004823 | chr2:213052804-213181263 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv536138 | chr2:213052804-213181263 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv1006051 | chr2:213052804-213273642 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 8 | nsv875807 | chr2:213054058-213103721 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 9 | nsv584346 | chr2:213067749-213258622 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 10 | esv2763085 | chr2:213073428-213107281 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
