Variant report

Variant	rs62182899
Chromosome Location	chr2:191488020-191488021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12470863	0.89[ASN][1000 genomes]
rs12472081	0.82[AFR][1000 genomes]
rs12474531	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12476782	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs12477369	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs16832765	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2192010	0.91[ASN][1000 genomes]
rs58568707	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs60847675	0.87[ASN][1000 genomes]
rs60915953	0.81[AFR][1000 genomes]
rs62181029	0.81[AFR][1000 genomes]
rs62182865	0.82[AFR][1000 genomes]
rs62182885	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs62182897	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6711928	0.89[ASN][1000 genomes]
rs7569128	0.91[ASN][1000 genomes]
rs7597860	0.84[EUR][1000 genomes]
rs7608839	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834492	chr2:191438864-191646621	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62182899	INPP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191456600-191491800	Weak transcription	Aorta	Aorta
2	chr2:191475400-191492400	Weak transcription	Fetal Brain Male	brain
3	chr2:191477000-191491400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:191486800-191492400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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