Variant report

Variant	rs62182865
Chromosome Location	chr2:191434180-191434181
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:191433891..191435681-chr2:191435734..191438832,3	K562	blood:
2	chr2:191434026..191436627-chr2:191744647..191746708,2	K562	blood:
3	chr2:191429848..191431908-chr2:191432642..191435324,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115419	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10190082	0.93[ASN][1000 genomes]
rs10432434	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10931458	0.93[ASN][1000 genomes]
rs1128723	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11885992	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12052514	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12053190	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12470863	0.85[ASN][1000 genomes]
rs12472081	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12476782	0.88[AFR][1000 genomes]
rs12477369	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12693579	0.91[ASN][1000 genomes]
rs16832765	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2192010	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35818159	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4258824	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4287794	0.82[ASN][1000 genomes]
rs4340549	0.93[ASN][1000 genomes]
rs4371384	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4439990	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4641969	0.93[ASN][1000 genomes]
rs4853510	0.93[ASN][1000 genomes]
rs4853710	0.80[ASN][1000 genomes]
rs4853716	0.92[ASN][1000 genomes]
rs56342910	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs58568707	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59929070	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs60847675	0.83[ASN][1000 genomes]
rs60915953	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62180992	0.83[AFR][1000 genomes]
rs62181016	0.86[EUR][1000 genomes]
rs62181018	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs62181019	0.82[ASN][1000 genomes]
rs62181020	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs62181029	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62181034	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62181052	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62182885	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62182897	0.89[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62182899	0.82[AFR][1000 genomes]
rs6711928	0.84[ASN][1000 genomes]
rs6712426	0.92[ASN][1000 genomes]
rs6727669	0.92[ASN][1000 genomes]
rs6731287	0.93[ASN][1000 genomes]
rs7567059	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7569128	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62182865	INPP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191411000-191443000	Weak transcription	Right Atrium	heart
2	chr2:191427200-191443000	Weak transcription	Right Ventricle	heart
3	chr2:191427600-191441400	Weak transcription	Aorta	Aorta
4	chr2:191431200-191437000	Weak transcription	Stomach Mucosa	stomach
5	chr2:191433000-191436600	Weak transcription	Fetal Intestine Small	intestine
6	chr2:191433000-191440600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr2:191433200-191434600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:191433200-191436400	Weak transcription	Brain Anterior Caudate	brain

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