Variant report

Variant	rs4641969
Chromosome Location	chr2:191396256-191396257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:191393388..191396315-chr2:191446782..191449171,2	K562	blood:
2	chr2:191385869..191388991-chr2:191394619..191398567,3	K562	blood:
3	chr2:191393746..191397306-chr2:191397440..191402907,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233654	Chromatin interaction
ENSG00000189362	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10084203	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10174174	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10188341	0.84[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10190082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10197348	0.81[CEU][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10432434	0.98[ASN][1000 genomes]
rs10931458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1128723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11885992	0.98[ASN][1000 genomes]
rs12052514	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12053190	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12470863	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12472081	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12477369	0.80[ASN][1000 genomes]
rs12693579	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13417431	0.80[ASN][1000 genomes]
rs16832765	0.91[JPT][hapmap]
rs2192010	0.80[ASN][1000 genomes]
rs35818159	0.95[ASN][1000 genomes]
rs4129082	0.86[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4258824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4261750	0.85[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4287794	0.85[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4340549	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4371384	0.93[ASN][1000 genomes]
rs4439990	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4853510	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4853710	0.85[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4853713	0.89[CHB][hapmap]
rs4853716	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56342910	0.84[ASN][1000 genomes]
rs59929070	0.86[ASN][1000 genomes]
rs60847675	0.87[EUR][1000 genomes]
rs60915953	0.98[ASN][1000 genomes]
rs61709084	0.80[ASN][1000 genomes]
rs62180992	0.80[ASN][1000 genomes]
rs62181018	0.86[ASN][1000 genomes]
rs62181019	0.86[ASN][1000 genomes]
rs62181020	0.86[ASN][1000 genomes]
rs62181029	0.97[ASN][1000 genomes]
rs62181034	0.98[ASN][1000 genomes]
rs62181052	0.97[ASN][1000 genomes]
rs62182865	0.93[ASN][1000 genomes]
rs6711928	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6712426	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6727669	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6731287	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7567059	0.98[ASN][1000 genomes]
rs7569128	0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs7581762	0.85[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7581986	0.85[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7593240	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4641969	INPP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191357200-191398200	Weak transcription	Fetal Kidney	kidney
2	chr2:191362800-191398200	Weak transcription	Fetal Brain Male	brain
3	chr2:191365200-191398000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr2:191365800-191397400	Weak transcription	Liver	Liver
5	chr2:191375200-191398600	Weak transcription	Ovary	ovary
6	chr2:191376000-191397800	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:191379400-191397800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr2:191379400-191398200	Weak transcription	Stomach Smooth Muscle	stomach
9	chr2:191382600-191398400	Weak transcription	Psoas Muscle	Psoas
10	chr2:191385400-191397200	Weak transcription	Thymus	Thymus
11	chr2:191387400-191398600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:191390800-191397400	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr2:191391000-191397200	Enhancers	Primary T cells from cord blood	blood
14	chr2:191391200-191398400	Weak transcription	Small Intestine	intestine
15	chr2:191391200-191398600	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr2:191392400-191397000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr2:191392600-191397000	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr2:191392600-191397400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr2:191392800-191396400	Enhancers	K562	blood
20	chr2:191393000-191397800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr2:191393200-191398000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr2:191393200-191398200	Enhancers	Primary hematopoietic stem cells	blood
23	chr2:191393200-191398600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr2:191393400-191398600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr2:191393400-191398600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr2:191393400-191398600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr2:191393600-191398400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr2:191393600-191398600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr2:191393800-191398400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr2:191394000-191396400	Enhancers	Fetal Thymus	thymus
31	chr2:191394000-191398000	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr2:191394000-191398200	Enhancers	Fetal Lung	lung
33	chr2:191394200-191398200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr2:191394600-191397400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr2:191394600-191398000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr2:191394600-191398200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr2:191394600-191398200	Enhancers	NHEK	skin
38	chr2:191394800-191396400	Flanking Active TSS	GM12878-XiMat	blood
39	chr2:191394800-191397800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr2:191394800-191398200	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr2:191394800-191398200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr2:191394800-191398400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr2:191394800-191398600	Weak transcription	Esophagus	oesophagus
44	chr2:191394800-191398600	Weak transcription	Gastric	stomach
45	chr2:191395000-191397400	Enhancers	Dnd41	blood
46	chr2:191395000-191398000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr2:191395200-191397200	Weak transcription	Spleen	Spleen
48	chr2:191395200-191397400	Weak transcription	A549	lung
49	chr2:191395200-191398000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr2:191395200-191398200	Weak transcription	NHLF	lung

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