Variant report

Variant	rs10084203
Chromosome Location	chr2:191304149-191304150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:191303601..191305161-chr2:191699632..191702385,2	MCF-7	breast:
2	chr2:191302906..191304417-chr2:191305140..191306765,2	K562	blood:
3	chr2:191302915..191305261-chr2:191313085..191315197,2	K562	blood:
4	chr2:191300907..191304417-chr2:191304488..191309004,4	K562	blood:

Variant related genes	Relation type
ENSG00000151690	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10174174	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10188341	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10190082	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10197348	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10432434	0.81[ASN][1000 genomes]
rs10931451	0.90[ASN][1000 genomes]
rs10931458	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1128723	0.80[ASN][1000 genomes]
rs11885992	0.80[ASN][1000 genomes]
rs12052514	0.81[ASN][1000 genomes]
rs12053190	0.81[ASN][1000 genomes]
rs12172905	0.90[ASN][1000 genomes]
rs12470863	0.81[EUR][1000 genomes]
rs12693579	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13417431	0.97[ASN][1000 genomes]
rs1866851	0.90[ASN][1000 genomes]
rs4129082	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4258824	0.81[ASN][1000 genomes]
rs4261750	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4287794	0.93[ASN][1000 genomes]
rs4340549	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4641969	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4853510	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4853710	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4853716	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56127319	0.96[ASN][1000 genomes]
rs56342910	0.92[ASN][1000 genomes]
rs59929070	0.93[ASN][1000 genomes]
rs60915953	0.81[ASN][1000 genomes]
rs61709084	0.97[ASN][1000 genomes]
rs62180987	0.90[ASN][1000 genomes]
rs62180990	0.88[ASN][1000 genomes]
rs62180992	0.97[ASN][1000 genomes]
rs62181018	0.93[ASN][1000 genomes]
rs62181019	0.93[ASN][1000 genomes]
rs62181020	0.93[ASN][1000 genomes]
rs62181034	0.80[ASN][1000 genomes]
rs6712426	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6727669	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6731287	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7567059	0.81[ASN][1000 genomes]
rs7581762	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7581986	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7593240	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10084203	INPP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191284200-191311000	Weak transcription	Psoas Muscle	Psoas
2	chr2:191296800-191311400	Weak transcription	Fetal Lung	lung
3	chr2:191297200-191306200	Weak transcription	K562	blood
4	chr2:191297400-191305600	Weak transcription	Small Intestine	intestine
5	chr2:191298400-191304600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:191298400-191306000	Weak transcription	Fetal Kidney	kidney
7	chr2:191298600-191309000	Weak transcription	Stomach Mucosa	stomach
8	chr2:191299600-191308800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr2:191299800-191305600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr2:191300600-191305000	Strong transcription	Primary B cells from cord blood	blood
11	chr2:191300800-191304400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr2:191301000-191306000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:191301200-191307000	Weak transcription	Fetal Heart	heart
14	chr2:191301600-191304800	Weak transcription	HepG2	liver
15	chr2:191301800-191305800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
16	chr2:191302000-191304200	Weak transcription	GM12878-XiMat	blood
17	chr2:191302000-191305600	Weak transcription	Brain Substantia Nigra	brain
18	chr2:191302000-191307800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:191302200-191305600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr2:191302200-191305600	Weak transcription	Gastric	stomach
21	chr2:191302200-191305600	Weak transcription	Left Ventricle	heart
22	chr2:191302200-191305600	Weak transcription	Lung	lung
23	chr2:191302200-191305600	Weak transcription	Pancreas	Pancrea
24	chr2:191302200-191305600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr2:191302200-191306000	Weak transcription	Spleen	Spleen
26	chr2:191302200-191307200	Weak transcription	Aorta	Aorta
27	chr2:191302200-191307200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr2:191302200-191308400	Weak transcription	Fetal Muscle Leg	muscle
29	chr2:191302200-191311200	Weak transcription	Fetal Stomach	stomach
30	chr2:191302200-191311400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:191302200-191319200	Weak transcription	Fetal Intestine Small	intestine
32	chr2:191302200-191321200	Weak transcription	Esophagus	oesophagus
33	chr2:191302400-191304400	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr2:191302400-191304600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr2:191302400-191306400	Weak transcription	Right Ventricle	heart
36	chr2:191302400-191307200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr2:191302400-191307400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr2:191302400-191308400	Weak transcription	Fetal Muscle Trunk	muscle
39	chr2:191302400-191331000	Weak transcription	A549	lung
40	chr2:191302600-191304400	Weak transcription	Brain Hippocampus Middle	brain
41	chr2:191302600-191304600	Weak transcription	Brain Angular Gyrus	brain
42	chr2:191302600-191304800	Weak transcription	Brain Anterior Caudate	brain
43	chr2:191302600-191307000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr2:191302600-191309000	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr2:191302600-191309400	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr2:191302600-191310600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr2:191302600-191311000	Weak transcription	Fetal Brain Male	brain
48	chr2:191302800-191304600	Weak transcription	Primary T cells from cord blood	blood
49	chr2:191302800-191305600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr2:191302800-191305600	Weak transcription	Rectal Mucosa Donor 31	rectum

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