Variant report

Variant	rs10931451
Chromosome Location	chr2:191270888-191270889
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191269134..191271352-chr2:191271446..191274465,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151690	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10084203	0.90[ASN][1000 genomes]
rs10174174	0.88[ASN][1000 genomes]
rs10188341	0.91[ASN][1000 genomes]
rs10197348	0.88[ASN][1000 genomes]
rs11693444	0.86[EUR][1000 genomes]
rs12172905	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13417431	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1866851	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4129082	0.90[ASN][1000 genomes]
rs4261750	0.90[ASN][1000 genomes]
rs4287794	0.87[ASN][1000 genomes]
rs4853710	0.85[ASN][1000 genomes]
rs56127319	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs56342910	0.85[ASN][1000 genomes]
rs59929070	0.87[ASN][1000 genomes]
rs61709084	0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs62180987	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62180990	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62180992	0.92[ASN][1000 genomes]
rs62181018	0.87[ASN][1000 genomes]
rs62181019	0.87[ASN][1000 genomes]
rs62181020	0.87[ASN][1000 genomes]
rs7581762	0.90[ASN][1000 genomes]
rs7581986	0.90[ASN][1000 genomes]
rs7593240	0.90[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10931451	HIBCH	Cis_1M	lymphoblastoid	RTeQTL
rs10931451	INPP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191267800-191271400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr2:191268600-191271800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr2:191268800-191272000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr2:191269000-191271400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr2:191269000-191272000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:191269400-191272000	Weak transcription	Brain Substantia Nigra	brain
7	chr2:191269400-191272400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:191269600-191271800	Weak transcription	Thymus	Thymus
9	chr2:191269600-191272000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr2:191269600-191272200	Weak transcription	A549	lung
11	chr2:191269800-191271800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr2:191269800-191272000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr2:191269800-191272000	Weak transcription	Stomach Mucosa	stomach
14	chr2:191269800-191272200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:191269800-191272200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:191269800-191272400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr2:191270000-191272000	Weak transcription	Fetal Brain Female	brain
18	chr2:191270000-191272000	Weak transcription	HMEC	breast
19	chr2:191270000-191272200	Weak transcription	Fetal Intestine Large	intestine
20	chr2:191270000-191272200	Weak transcription	Placenta	Placenta
21	chr2:191270000-191272200	Weak transcription	NHEK	skin
22	chr2:191270200-191271400	Weak transcription	K562	blood
23	chr2:191270200-191272200	Weak transcription	Fetal Intestine Small	intestine
24	chr2:191270200-191272200	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr2:191270200-191272400	Weak transcription	Hela-S3	cervix

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