Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191266308..191268614-chr2:191271483..191274292,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151690	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10084203	0.90[ASN][1000 genomes]
rs10174174	0.88[ASN][1000 genomes]
rs10188341	0.91[ASN][1000 genomes]
rs10197348	0.88[ASN][1000 genomes]
rs10931451	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11693444	0.86[EUR][1000 genomes]
rs12172905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13417431	0.92[ASN][1000 genomes]
rs4129082	0.90[ASN][1000 genomes]
rs4261750	0.90[ASN][1000 genomes]
rs4287794	0.87[ASN][1000 genomes]
rs4853710	0.85[ASN][1000 genomes]
rs56127319	0.89[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs56342910	0.85[ASN][1000 genomes]
rs59929070	0.87[ASN][1000 genomes]
rs61709084	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs62180987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62180990	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62180992	0.92[ASN][1000 genomes]
rs62181018	0.87[ASN][1000 genomes]
rs62181019	0.87[ASN][1000 genomes]
rs62181020	0.87[ASN][1000 genomes]
rs7581762	0.90[ASN][1000 genomes]
rs7581986	0.90[ASN][1000 genomes]
rs7593240	0.90[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1866851	INPP1	Cis_1M	lymphoblastoid	RTeQTL
rs1866851	HIBCH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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