Variant report

Variant	rs7581762
Chromosome Location	chr2:191305824-191305825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191302906..191304417-chr2:191305140..191306765,2	K562	blood:
2	chr2:191300907..191304417-chr2:191304488..191309004,4	K562	blood:

Variant related genes	Relation type
ENSG00000151690	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10084203	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10174174	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10188341	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10190082	0.85[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10197348	0.95[CEU][hapmap];0.94[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10432434	0.81[ASN][1000 genomes]
rs10931451	0.90[ASN][1000 genomes]
rs10931458	0.85[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1128723	0.84[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs11885992	0.80[ASN][1000 genomes]
rs12052514	0.84[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs12053190	0.84[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs12172905	0.90[ASN][1000 genomes]
rs12470863	0.81[EUR][1000 genomes]
rs12472081	0.90[CHD][hapmap];0.95[JPT][hapmap]
rs12693579	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13417431	0.97[ASN][1000 genomes]
rs16832765	0.85[JPT][hapmap]
rs1866851	0.90[ASN][1000 genomes]
rs4129082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4258824	0.84[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs4261750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4287794	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4340549	0.81[CEU][hapmap];0.84[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4439990	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs4641969	0.85[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4853510	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4853708	0.83[YRI][hapmap]
rs4853710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4853716	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56127319	0.96[ASN][1000 genomes]
rs56342910	0.92[ASN][1000 genomes]
rs59929070	0.93[ASN][1000 genomes]
rs60915953	0.81[ASN][1000 genomes]
rs61709084	0.97[ASN][1000 genomes]
rs62180987	0.90[ASN][1000 genomes]
rs62180990	0.88[ASN][1000 genomes]
rs62180992	0.97[ASN][1000 genomes]
rs62181018	0.93[ASN][1000 genomes]
rs62181019	0.93[ASN][1000 genomes]
rs62181020	0.93[ASN][1000 genomes]
rs62181034	0.80[ASN][1000 genomes]
rs6712426	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6727669	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6731287	0.81[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.85[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7564829	0.95[LWK][hapmap];0.81[AFR][1000 genomes]
rs7567059	0.81[ASN][1000 genomes]
rs7569128	0.85[JPT][hapmap]
rs7581986	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7593240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7581762	HIBCH	cis	parietal	SCAN
rs7581762	MSTN	cis	cerebellum	SCAN
rs7581762	INPP1	cis	parietal	SCAN
rs7581762	INPP1	cis	cerebellum	SCAN
rs7581762	MFSD6	cis	cerebellum	SCAN

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191284200-191311000	Weak transcription	Psoas Muscle	Psoas
2	chr2:191296800-191311400	Weak transcription	Fetal Lung	lung
3	chr2:191297200-191306200	Weak transcription	K562	blood
4	chr2:191298400-191306000	Weak transcription	Fetal Kidney	kidney
5	chr2:191298600-191309000	Weak transcription	Stomach Mucosa	stomach
6	chr2:191299600-191308800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr2:191301000-191306000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:191301200-191307000	Weak transcription	Fetal Heart	heart
9	chr2:191302000-191307800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:191302200-191306000	Weak transcription	Spleen	Spleen
11	chr2:191302200-191307200	Weak transcription	Aorta	Aorta
12	chr2:191302200-191307200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr2:191302200-191308400	Weak transcription	Fetal Muscle Leg	muscle
14	chr2:191302200-191311200	Weak transcription	Fetal Stomach	stomach
15	chr2:191302200-191311400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:191302200-191319200	Weak transcription	Fetal Intestine Small	intestine
17	chr2:191302200-191321200	Weak transcription	Esophagus	oesophagus
18	chr2:191302400-191306400	Weak transcription	Right Ventricle	heart
19	chr2:191302400-191307200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr2:191302400-191307400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr2:191302400-191308400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr2:191302400-191331000	Weak transcription	A549	lung
23	chr2:191302600-191307000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr2:191302600-191309000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr2:191302600-191309400	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr2:191302600-191310600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr2:191302600-191311000	Weak transcription	Fetal Brain Male	brain
28	chr2:191302800-191307800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr2:191302800-191308600	Weak transcription	Colonic Mucosa	Colon
30	chr2:191302800-191317200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr2:191302800-191319400	Weak transcription	Fetal Brain Female	brain
32	chr2:191302800-191320200	Weak transcription	Fetal Thymus	thymus
33	chr2:191302800-191321200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr2:191303400-191310400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr2:191303400-191311000	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr2:191303400-191311200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr2:191303400-191321000	Weak transcription	Thymus	Thymus
38	chr2:191303400-191321200	Weak transcription	Dnd41	blood
39	chr2:191303600-191309000	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr2:191303600-191310200	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr2:191303600-191321000	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr2:191303800-191308000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr2:191303800-191308400	Weak transcription	Primary hematopoietic stem cells	blood
44	chr2:191303800-191321000	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr2:191303800-191331600	Weak transcription	Brain Germinal Matrix	brain
46	chr2:191303800-191332600	Weak transcription	Fetal Intestine Large	intestine
47	chr2:191304000-191307400	Weak transcription	Colon Smooth Muscle	Colon
48	chr2:191304000-191308400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr2:191304000-191311000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr2:191304400-191313200	Enhancers	Brain Hippocampus Middle	brain

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