Variant report

Variant	rs7564829
Chromosome Location	chr2:191305647-191305648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191302906..191304417-chr2:191305140..191306765,2	K562	blood:
2	chr2:191300907..191304417-chr2:191304488..191309004,4	K562	blood:

Variant related genes	Relation type
ENSG00000151690	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10182754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10193212	1.00[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10931452	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12475614	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12613807	1.00[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12693574	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12693575	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12998288	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs13020324	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13409841	0.96[CEU][hapmap];0.86[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2354878	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35095338	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3811607	0.94[ASW][hapmap];0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4129081	0.82[YRI][hapmap]
rs4129082	0.81[AFR][1000 genomes]
rs4853507	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4853702	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4853705	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4853711	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4853713	0.84[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6434391	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6707691	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7557681	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7560318	0.82[YRI][hapmap]
rs7581762	0.95[LWK][hapmap];0.81[AFR][1000 genomes]
rs7581986	0.87[LWK][hapmap]
rs7596573	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7603607	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9646748	0.82[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9646815	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs7564829	FLJ20160	Cis_1M	lymphoblastoid	RTeQTL
rs7564829	HIBCH	cis	cerebellum	SCAN
rs7564829	FLJ20160	cis	multi-tissue	Pritchard
rs7564829	ZC3H15	cis	cerebellum	SCAN
rs7564829	MFSD6	cis	parietal	SCAN
rs7564829	C2orf88	cis	parietal	SCAN
rs7564829	TMEM194B	cis	Adipose Subcutaneous	GTEx
rs7564829	MFSD6	cis	lymphoblastoid	seeQTL

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191284200-191311000	Weak transcription	Psoas Muscle	Psoas
2	chr2:191296800-191311400	Weak transcription	Fetal Lung	lung
3	chr2:191297200-191306200	Weak transcription	K562	blood
4	chr2:191298400-191306000	Weak transcription	Fetal Kidney	kidney
5	chr2:191298600-191309000	Weak transcription	Stomach Mucosa	stomach
6	chr2:191299600-191308800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr2:191301000-191306000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:191301200-191307000	Weak transcription	Fetal Heart	heart
9	chr2:191301800-191305800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
10	chr2:191302000-191307800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:191302200-191306000	Weak transcription	Spleen	Spleen
12	chr2:191302200-191307200	Weak transcription	Aorta	Aorta
13	chr2:191302200-191307200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr2:191302200-191308400	Weak transcription	Fetal Muscle Leg	muscle
15	chr2:191302200-191311200	Weak transcription	Fetal Stomach	stomach
16	chr2:191302200-191311400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:191302200-191319200	Weak transcription	Fetal Intestine Small	intestine
18	chr2:191302200-191321200	Weak transcription	Esophagus	oesophagus
19	chr2:191302400-191306400	Weak transcription	Right Ventricle	heart
20	chr2:191302400-191307200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr2:191302400-191307400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr2:191302400-191308400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr2:191302400-191331000	Weak transcription	A549	lung
24	chr2:191302600-191307000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr2:191302600-191309000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr2:191302600-191309400	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr2:191302600-191310600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr2:191302600-191311000	Weak transcription	Fetal Brain Male	brain
29	chr2:191302800-191307800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr2:191302800-191308600	Weak transcription	Colonic Mucosa	Colon
31	chr2:191302800-191317200	Weak transcription	Primary B cells from peripheral blood	blood
32	chr2:191302800-191319400	Weak transcription	Fetal Brain Female	brain
33	chr2:191302800-191320200	Weak transcription	Fetal Thymus	thymus
34	chr2:191302800-191321200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr2:191303400-191310400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr2:191303400-191311000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr2:191303400-191311200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr2:191303400-191321000	Weak transcription	Thymus	Thymus
39	chr2:191303400-191321200	Weak transcription	Dnd41	blood
40	chr2:191303600-191309000	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr2:191303600-191310200	Enhancers	Primary T helper naive cells from peripheral blood	blood
42	chr2:191303600-191321000	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr2:191303800-191308000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr2:191303800-191308400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr2:191303800-191321000	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr2:191303800-191331600	Weak transcription	Brain Germinal Matrix	brain
47	chr2:191303800-191332600	Weak transcription	Fetal Intestine Large	intestine
48	chr2:191304000-191305800	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr2:191304000-191307400	Weak transcription	Colon Smooth Muscle	Colon
50	chr2:191304000-191308400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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