Variant report

Variant	rs4371384
Chromosome Location	chr2:191430741-191430742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191396816..191398352-chr2:191428817..191431655,2	K562	blood:
2	chr2:191429848..191431908-chr2:191432642..191435324,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10190082	0.93[ASN][1000 genomes]
rs10432434	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10931458	0.93[ASN][1000 genomes]
rs1128723	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11885992	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12052514	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12053190	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12470863	0.85[ASN][1000 genomes]
rs12472081	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12477369	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12693579	0.91[ASN][1000 genomes]
rs16832765	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2192010	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35818159	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4258824	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4287794	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4340549	0.93[ASN][1000 genomes]
rs4439990	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4641969	0.93[ASN][1000 genomes]
rs4853510	0.93[ASN][1000 genomes]
rs4853710	0.80[ASN][1000 genomes]
rs4853716	0.92[ASN][1000 genomes]
rs56342910	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs58568707	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59929070	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60847675	0.83[ASN][1000 genomes]
rs60915953	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62181018	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62181019	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62181020	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62181029	0.93[ASN][1000 genomes]
rs62181034	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62181052	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62182865	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62182885	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62182897	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6711928	0.84[ASN][1000 genomes]
rs6712426	0.92[ASN][1000 genomes]
rs6727669	0.92[ASN][1000 genomes]
rs6731287	0.93[ASN][1000 genomes]
rs7567059	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7569128	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7592578	0.84[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4371384	INPP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191411000-191443000	Weak transcription	Right Atrium	heart
2	chr2:191427200-191443000	Weak transcription	Right Ventricle	heart
3	chr2:191427600-191441400	Weak transcription	Aorta	Aorta
4	chr2:191428200-191431400	Weak transcription	Primary T cells from cord blood	blood
5	chr2:191429600-191431200	Enhancers	Stomach Mucosa	stomach
6	chr2:191430200-191432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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