Variant report

Variant	rs62182885
Chromosome Location	chr2:191437024-191437025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:191435113..191437081-chr2:191440439..191443139,3	MCF-7	breast:
2	chr2:191426756..191429065-chr2:191435879..191437749,2	K562	blood:
3	chr2:191433891..191435681-chr2:191435734..191438832,3	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10432434	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1128723	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11885992	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12052514	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12053190	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12470863	0.97[ASN][1000 genomes]
rs12472081	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12474531	0.90[ASN][1000 genomes]
rs12476782	0.91[AFR][1000 genomes]
rs12477369	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16832765	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2192010	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35818159	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4258824	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4371384	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4439990	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58568707	0.89[AFR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60847675	0.95[ASN][1000 genomes]
rs60915953	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62180992	0.81[AFR][1000 genomes]
rs62181016	0.83[EUR][1000 genomes]
rs62181029	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62181034	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62181052	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62182865	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62182897	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62182899	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6711928	0.96[ASN][1000 genomes]
rs7567059	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7569128	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7608839	0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62182885	INPP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191411000-191443000	Weak transcription	Right Atrium	heart
2	chr2:191427200-191443000	Weak transcription	Right Ventricle	heart
3	chr2:191427600-191441400	Weak transcription	Aorta	Aorta
4	chr2:191433000-191440600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr2:191434600-191439400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:191434600-191439400	Enhancers	HMEC	breast
7	chr2:191434600-191439400	Enhancers	NHEK	skin
8	chr2:191434800-191438400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:191435000-191438400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr2:191435000-191439400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:191435400-191438400	Weak transcription	Esophagus	oesophagus
12	chr2:191435400-191443000	Weak transcription	Left Ventricle	heart
13	chr2:191435600-191438000	Weak transcription	Colon Smooth Muscle	Colon
14	chr2:191436200-191439400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr2:191436400-191437200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:191436400-191439200	Enhancers	Fetal Stomach	stomach
17	chr2:191436400-191439200	Enhancers	Hela-S3	cervix
18	chr2:191436400-191439400	Enhancers	A549	lung
19	chr2:191436600-191438400	Enhancers	Fetal Intestine Small	intestine
20	chr2:191436800-191439800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr2:191436800-191442800	Weak transcription	Brain Hippocampus Middle	brain
22	chr2:191436800-191443000	Weak transcription	Brain Anterior Caudate	brain
23	chr2:191436800-191457000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr2:191437000-191437200	Weak transcription	Fetal Lung	lung
25	chr2:191437000-191437200	Enhancers	Stomach Mucosa	stomach
26	chr2:191437000-191437400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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