Variant report

Variant	rs35818159
Chromosome Location	chr2:191409616-191409617
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191319837..191321780-chr2:191409480..191411973,2	K562	blood:
2	chr2:191404829..191406532-chr2:191409105..191411323,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10190082	0.95[ASN][1000 genomes]
rs10432434	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10931458	0.95[ASN][1000 genomes]
rs10931461	0.81[ASN][1000 genomes]
rs1128723	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11885992	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12052514	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12053190	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12470863	0.83[ASN][1000 genomes]
rs12472081	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12476782	0.81[AFR][1000 genomes]
rs12477369	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12693579	0.94[ASN][1000 genomes]
rs16832765	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2192010	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4258824	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4287794	0.84[ASN][1000 genomes]
rs4340549	0.95[ASN][1000 genomes]
rs4371384	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4439990	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4641969	0.95[ASN][1000 genomes]
rs4853510	0.95[ASN][1000 genomes]
rs4853710	0.83[ASN][1000 genomes]
rs4853716	0.94[ASN][1000 genomes]
rs56342910	0.83[ASN][1000 genomes]
rs58568707	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59929070	0.84[ASN][1000 genomes]
rs60847675	0.81[ASN][1000 genomes]
rs60915953	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62180992	0.81[AFR][1000 genomes]
rs62181016	0.82[EUR][1000 genomes]
rs62181018	0.84[ASN][1000 genomes]
rs62181019	0.84[ASN][1000 genomes]
rs62181020	0.84[ASN][1000 genomes]
rs62181029	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62181034	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62181052	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62182865	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62182885	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62182897	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6711928	0.82[ASN][1000 genomes]
rs6712426	0.94[ASN][1000 genomes]
rs6727669	0.94[ASN][1000 genomes]
rs6731287	0.95[ASN][1000 genomes]
rs7567059	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7569128	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35818159	INPP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191403000-191416800	Weak transcription	Gastric	stomach
2	chr2:191405400-191409800	Weak transcription	Aorta	Aorta
3	chr2:191405400-191416800	Weak transcription	Esophagus	oesophagus
4	chr2:191406600-191410000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr2:191407000-191410200	Weak transcription	Brain Anterior Caudate	brain
6	chr2:191407600-191409800	Enhancers	Osteobl	bone
7	chr2:191408200-191410000	Weak transcription	Right Atrium	heart
8	chr2:191408400-191411600	Weak transcription	Psoas Muscle	Psoas
9	chr2:191408800-191410000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:191409000-191410000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:191409000-191410200	Weak transcription	HSMM	muscle
12	chr2:191409400-191413600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:191409600-191409800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:191409600-191409800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr2:191409600-191409800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr2:191409600-191409800	Enhancers	NHLF	lung

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