Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10170647	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10180847	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10490013	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11562975	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11563212	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11902618	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12466401	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12476852	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17863847	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17863851	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17864744	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4663344	0.90[EUR][1000 genomes]
rs4663345	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4663987	0.91[EUR][1000 genomes]
rs4663991	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6712540	0.85[EUR][1000 genomes]
rs735551	0.87[EUR][1000 genomes]
rs735552	0.88[EUR][1000 genomes]
rs7569987	0.91[EUR][1000 genomes]
rs7577157	0.87[EUR][1000 genomes]
rs7595960	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234849400-234883400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:234849600-234873800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:234862600-234882200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:234863000-234882200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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