Variant report

Variant	rs17863851
Chromosome Location	chr2:234866429-234866430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1003757	0.86[CEU][hapmap]
rs10170647	1.00[CEU][hapmap];0.93[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10180847	0.89[CEU][hapmap];0.93[GIH][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10490013	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10803664	1.00[CEU][hapmap]
rs11562975	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11563212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11902618	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12466401	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12476852	1.00[CEU][hapmap];0.93[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17863847	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17864744	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2108807	0.93[MEX][hapmap]
rs4497869	1.00[CEU][hapmap];0.90[GIH][hapmap];0.82[TSI][hapmap]
rs4663344	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4663345	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4663985	1.00[CEU][hapmap];0.90[GIH][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap]
rs4663987	0.89[CEU][hapmap];0.93[GIH][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap];0.91[EUR][1000 genomes]
rs4663991	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62192338	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6712540	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs735551	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs735552	0.86[CEU][hapmap];0.93[GIH][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap];0.88[EUR][1000 genomes]
rs737635	1.00[CEU][hapmap]
rs7569987	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7577157	1.00[CEU][hapmap];0.87[GIH][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs7595960	1.00[CEU][hapmap];0.84[GIH][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234849400-234883400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:234849600-234873800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:234862600-234882200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:234863000-234882200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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