Variant report

Variant	rs4663985
Chromosome Location	chr2:234834365-234834366
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1003756	0.80[GIH][hapmap]
rs1003757	0.86[CEU][hapmap]
rs10170647	1.00[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];0.82[TSI][hapmap]
rs10172275	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10172388	0.96[EUR][1000 genomes]
rs10180847	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.82[TSI][hapmap]
rs10203291	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10490013	1.00[CEU][hapmap];0.90[GIH][hapmap]
rs10519356	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.92[ASN][1000 genomes]
rs10803664	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11562975	1.00[CEU][hapmap]
rs11563212	1.00[CEU][hapmap];0.90[GIH][hapmap];0.81[MEX][hapmap]
rs12466401	1.00[CEU][hapmap]
rs12476852	1.00[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];0.82[TSI][hapmap]
rs13396996	0.90[ASN][1000 genomes]
rs17863851	1.00[CEU][hapmap];0.90[GIH][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap]
rs17864744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2108806	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2108807	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4497869	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4663344	1.00[CEU][hapmap]
rs4663345	1.00[CEU][hapmap]
rs4663987	0.82[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];0.89[YRI][hapmap]
rs4663991	1.00[CEU][hapmap]
rs6712540	1.00[CEU][hapmap]
rs73118767	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs735551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs735552	0.82[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs737635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7569987	1.00[CEU][hapmap]
rs7570755	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7577157	1.00[CEU][hapmap];0.90[GIH][hapmap]
rs7583713	0.85[CHD][hapmap]
rs7595960	1.00[CEU][hapmap];0.87[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234832600-234834800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr2:234833000-234834400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:234833000-234834400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:234833600-234834800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:234834000-234834400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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