Variant report
Variant | rs10203291 |
---|---|
Chromosome Location | chr2:234824050-234824051 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:110)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:234361502..234363996-chr2:234822105..234824849,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
TRPM8 | TF binding region |
rs_ID | r2[population] |
---|---|
rs1003756 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes] |
rs1003757 | 1.00[CEU][hapmap];0.85[EUR][1000 genomes] |
rs10172275 | 0.96[ASN][1000 genomes] |
rs10180847 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
rs10519356 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs13396996 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17864744 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs2017655 | 0.85[EUR][1000 genomes] |
rs2108806 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2108807 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs4497869 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs4663984 | 0.86[EUR][1000 genomes] |
rs4663985 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs4663987 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs73118767 | 0.92[ASN][1000 genomes] |
rs735551 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs735552 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs737635 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs7570755 | 1.00[CHB][hapmap];0.86[JPT][hapmap] |
rs7582832 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1013712 | chr2:234558457-235495825 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
2 | nsv532476 | chr2:234595695-235134381 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:234823800-234825000 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |