Variant report

Variant	rs10180847
Chromosome Location	chr2:234842109-234842110
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1003756	0.83[GIH][hapmap]
rs1003757	0.83[GIH][hapmap]
rs10170647	0.90[CEU][hapmap];0.93[GIH][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10203291	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10490013	0.90[CEU][hapmap];0.93[GIH][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10519356	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap]
rs10803664	0.90[CEU][hapmap]
rs11562975	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11563212	0.90[CEU][hapmap];0.93[GIH][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11902618	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12466401	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12476852	0.90[CEU][hapmap];0.93[GIH][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17863847	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17863851	0.89[CEU][hapmap];0.93[GIH][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17864744	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2108806	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.87[TSI][hapmap]
rs2108807	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap]
rs4497869	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];0.82[TSI][hapmap]
rs4663344	0.90[CEU][hapmap]
rs4663345	0.90[CEU][hapmap];0.84[EUR][1000 genomes]
rs4663985	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.82[TSI][hapmap]
rs4663987	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4663991	0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62192338	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6712540	0.90[CEU][hapmap]
rs735551	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs735552	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs737635	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs7569987	0.90[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7570755	1.00[CHB][hapmap]
rs7577157	0.90[CEU][hapmap];0.94[GIH][hapmap];0.85[EUR][1000 genomes]
rs7595960	0.90[CEU][hapmap];0.91[GIH][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234841000-234844800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr2:234841800-234847600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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