Variant report
| Variant | rs10803664 |
|---|---|
| Chromosome Location | chr2:234832388-234832389 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 2:234825998-234827518..2:234830063-234832735 | GM12878 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000144481 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1003757 | 0.86[CEU][hapmap] |
| rs10170647 | 1.00[CEU][hapmap] |
| rs10172275 | 0.94[EUR][1000 genomes] |
| rs10172388 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10180847 | 0.90[CEU][hapmap] |
| rs10490013 | 1.00[CEU][hapmap] |
| rs11562975 | 1.00[CEU][hapmap] |
| rs11563212 | 1.00[CEU][hapmap] |
| rs12466401 | 1.00[CEU][hapmap] |
| rs12476852 | 1.00[CEU][hapmap] |
| rs17863851 | 1.00[CEU][hapmap] |
| rs17864744 | 1.00[CEU][hapmap] |
| rs4497869 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs4663344 | 1.00[CEU][hapmap] |
| rs4663345 | 1.00[CEU][hapmap] |
| rs4663985 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs4663987 | 0.90[CEU][hapmap] |
| rs4663991 | 1.00[CEU][hapmap] |
| rs6712540 | 1.00[CEU][hapmap] |
| rs73118767 | 0.96[EUR][1000 genomes] |
| rs735551 | 1.00[CEU][hapmap] |
| rs735552 | 0.88[CEU][hapmap] |
| rs737635 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7569987 | 1.00[CEU][hapmap] |
| rs7577157 | 1.00[CEU][hapmap] |
| rs7595960 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013712 | chr2:234558457-235495825 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| 2 | nsv532476 | chr2:234595695-235134381 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:234827600-234834000 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr2:234827800-234833600 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
