Variant report

Variant	rs62234167
Chromosome Location	chr22:33281502-33281503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33275938..33278080-chr22:33280895..33283450,2	K562	blood:
2	22:32102727-32109893..22:33281002-33282103	Hela-S3	cervix:
3	22:32264718-32278135..22:33281002-33282103	Hela-S3	cervix:
4	22:31864703-31891033..22:33281002-33282103	Hela-S3	cervix:
5	22:32170492-32188129..22:33281002-33282103	H1-hESC	embryonic stem cell:	embryo
6	22:32292186-32294405..22:33281002-33282103	Hela-S3	cervix:
7	22:32920308-32927723..22:33281002-33282103	Hela-S3	cervix:
8	22:32740683-32750950..22:33281002-33282103	Hela-S3	cervix:
9	22:33281002-33282103..22:33339333-33353583	Hela-S3	cervix:
10	22:32764253-32784733..22:33281002-33282103	Hela-S3	cervix:
11	22:32578360-32590642..22:33281002-33282103	Hela-S3	cervix:
12	22:33262063-33266567..22:33281002-33282103	H1-hESC	embryonic stem cell:	embryo

No data

Variant related genes	Relation type
ENSG00000198089	Chromatin interaction
ENSG00000230736	Chromatin interaction
ENSG00000232218	Chromatin interaction
ENSG00000205853	Chromatin interaction
ENSG00000199248	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000185666	Chromatin interaction
ENSG00000243519	Chromatin interaction
ENSG00000128253	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000183530	Chromatin interaction
ENSG00000241954	Chromatin interaction
ENSG00000128276	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12170951	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13433590	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs137507	1.00[ASN][1000 genomes]
rs137509	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs137525	0.86[ASN][1000 genomes]
rs137530	0.86[ASN][1000 genomes]
rs4452	1.00[ASN][1000 genomes]
rs58381381	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58811278	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61027525	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62234166	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62234176	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62234177	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62234178	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs80693	0.86[ASN][1000 genomes]
rs9619317	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33237400-33282200	Weak transcription	Fetal Brain Female	brain
2	chr22:33257800-33282000	Weak transcription	HepG2	liver
3	chr22:33265200-33282000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr22:33265600-33287000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr22:33270800-33287200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr22:33274200-33286200	Enhancers	Fetal Heart	heart
7	chr22:33275400-33285400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr22:33275800-33284000	Enhancers	Fetal Stomach	stomach
9	chr22:33277000-33284800	Weak transcription	Ovary	ovary
10	chr22:33277000-33302000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr22:33277600-33282800	Weak transcription	Right Atrium	heart
12	chr22:33277600-33283800	Weak transcription	HSMMtube	muscle
13	chr22:33277600-33285000	Weak transcription	Left Ventricle	heart
14	chr22:33278200-33283400	Weak transcription	Right Ventricle	heart
15	chr22:33279400-33282800	Weak transcription	Placenta	Placenta
16	chr22:33279600-33281800	Weak transcription	Fetal Muscle Leg	muscle
17	chr22:33279600-33283000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr22:33279600-33287000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr22:33279800-33282200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr22:33280000-33281800	Weak transcription	K562	blood
21	chr22:33280000-33282200	Enhancers	Fetal Brain Male	brain
22	chr22:33280000-33284800	Weak transcription	Fetal Kidney	kidney
23	chr22:33280000-33287400	Weak transcription	Fetal Thymus	thymus
24	chr22:33280200-33282600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr22:33281400-33281600	Enhancers	Fetal Muscle Trunk	muscle

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