Variant report

Variant	rs62234178
Chromosome Location	chr22:33306021-33306022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33300798..33303158-chr22:33303918..33306579,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12166948	0.85[ASN][1000 genomes]
rs12167376	0.81[ASN][1000 genomes]
rs12170951	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13433590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs137507	0.86[ASN][1000 genomes]
rs137509	0.86[ASN][1000 genomes]
rs137525	1.00[ASN][1000 genomes]
rs137530	1.00[ASN][1000 genomes]
rs4452	0.86[ASN][1000 genomes]
rs58381381	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58811278	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61027525	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62234166	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62234167	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62234176	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62234177	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62234180	0.85[ASN][1000 genomes]
rs80693	1.00[ASN][1000 genomes]
rs9619317	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621594	0.85[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33287800-33309600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr22:33287800-33312000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr22:33290000-33312000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr22:33298000-33306800	Weak transcription	K562	blood
5	chr22:33300000-33307000	Weak transcription	Brain Substantia Nigra	brain
6	chr22:33302400-33307200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr22:33304600-33308000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr22:33305000-33306200	Enhancers	Aorta	Aorta
9	chr22:33305000-33307800	Enhancers	Colon Smooth Muscle	Colon
10	chr22:33305000-33308200	Enhancers	Fetal Lung	lung
11	chr22:33305000-33308200	Enhancers	Fetal Stomach	stomach
12	chr22:33305200-33307600	Enhancers	Rectal Smooth Muscle	rectum
13	chr22:33305600-33306200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr22:33305600-33307800	Enhancers	Brain Hippocampus Middle	brain
15	chr22:33305600-33308000	Enhancers	Fetal Brain Female	brain
16	chr22:33305600-33308000	Enhancers	Ovary	ovary
17	chr22:33305800-33306200	Enhancers	Brain Anterior Caudate	brain
18	chr22:33305800-33306600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr22:33305800-33306600	Enhancers	Fetal Muscle Leg	muscle
20	chr22:33305800-33306600	Flanking Active TSS	Stomach Smooth Muscle	stomach
21	chr22:33305800-33307000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr22:33305800-33307600	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr22:33305800-33308000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr22:33306000-33306200	Flanking Active TSS	Brain Cingulate Gyrus	brain
25	chr22:33306000-33306200	Flanking Active TSS	Fetal Brain Male	brain
26	chr22:33306000-33306400	Enhancers	Brain Angular Gyrus	brain
27	chr22:33306000-33307400	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links