Variant report

Variant	rs80693
Chromosome Location	chr22:33300347-33300348
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33277494..33279713-chr22:33299469..33301691,2	K562	blood:
2	chr22:33300095..33301805-chr22:33313457..33316283,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10483166	0.82[JPT][hapmap];1.00[YRI][hapmap]
rs12165359	0.82[JPT][hapmap];1.00[YRI][hapmap]
rs12166948	0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12167376	0.81[ASN][1000 genomes]
rs12168216	0.82[JPT][hapmap];1.00[YRI][hapmap]
rs12170951	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs13433590	1.00[ASN][1000 genomes]
rs137507	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs137509	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs137522	0.82[AMR][1000 genomes]
rs137525	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs137530	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4447	0.81[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes]
rs4452	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58381381	0.98[ASN][1000 genomes]
rs58811278	1.00[ASN][1000 genomes]
rs61027525	1.00[ASN][1000 genomes]
rs62234166	0.84[ASN][1000 genomes]
rs62234167	0.86[ASN][1000 genomes]
rs62234176	1.00[ASN][1000 genomes]
rs62234177	1.00[ASN][1000 genomes]
rs62234178	1.00[ASN][1000 genomes]
rs62234180	0.85[ASN][1000 genomes]
rs9619317	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs9621594	0.85[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33277000-33302000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr22:33287800-33309600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr22:33287800-33312000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr22:33290000-33312000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr22:33293600-33301400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr22:33298000-33306800	Weak transcription	K562	blood
7	chr22:33298400-33300800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr22:33299400-33302400	Enhancers	Fetal Brain Male	brain
9	chr22:33299400-33302400	Enhancers	Fetal Heart	heart
10	chr22:33299600-33302400	Enhancers	Fetal Brain Female	brain
11	chr22:33300000-33301000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr22:33300000-33301200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr22:33300000-33307000	Weak transcription	Brain Substantia Nigra	brain
14	chr22:33300200-33302200	Enhancers	Colon Smooth Muscle	Colon
15	chr22:33300200-33302400	Enhancers	Fetal Stomach	stomach

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