Variant report

Variant	rs62238897
Chromosome Location	chr22:32170124-32170125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11703246	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11705112	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12157989	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs5998115	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060929	chr22:32102701-32176860	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32150400-32174200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr22:32150600-32172600	Weak transcription	Small Intestine	intestine
3	chr22:32150800-32212800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr22:32151000-32174400	Weak transcription	Psoas Muscle	Psoas
5	chr22:32151000-32210800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr22:32151200-32174800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr22:32151200-32181000	Weak transcription	NHDF-Ad	bronchial
8	chr22:32151400-32217400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr22:32151600-32170600	Weak transcription	HUVEC	blood vessel
10	chr22:32151600-32178200	Weak transcription	Stomach Mucosa	stomach
11	chr22:32151800-32173800	Weak transcription	HepG2	liver
12	chr22:32152200-32184000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr22:32152400-32187000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr22:32153000-32181600	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr22:32153400-32187000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr22:32153800-32183800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr22:32154000-32170800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr22:32154000-32182000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr22:32154000-32188600	Strong transcription	Fetal Muscle Trunk	muscle
20	chr22:32154200-32170800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr22:32154200-32171000	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr22:32154200-32180600	Strong transcription	Fetal Stomach	stomach
23	chr22:32154200-32184000	Strong transcription	Liver	Liver
24	chr22:32154400-32188200	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr22:32156200-32182200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr22:32156400-32184000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr22:32156800-32172400	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr22:32158400-32172000	Weak transcription	Fetal Brain Male	brain
29	chr22:32159000-32177000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr22:32159200-32171200	Strong transcription	Placenta	Placenta
31	chr22:32159200-32179600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr22:32159400-32184200	Strong transcription	Primary B cells from peripheral blood	blood
33	chr22:32159600-32186600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr22:32159600-32207600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr22:32160800-32171000	Strong transcription	Lung	lung
36	chr22:32161400-32174400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr22:32162000-32173800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr22:32162000-32173800	Weak transcription	Esophagus	oesophagus
39	chr22:32162000-32173800	Weak transcription	Pancreas	Pancrea
40	chr22:32162000-32174600	Weak transcription	Right Ventricle	heart
41	chr22:32162400-32170800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr22:32162400-32174400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr22:32162600-32174000	Weak transcription	NHEK	skin
44	chr22:32162600-32174200	Weak transcription	HSMMtube	muscle
45	chr22:32162600-32174600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr22:32162800-32173800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr22:32162800-32174000	Weak transcription	Brain Angular Gyrus	brain
48	chr22:32163000-32171400	Weak transcription	Primary hematopoietic stem cells	blood
49	chr22:32163000-32174000	Weak transcription	Fetal Kidney	kidney
50	chr22:32163000-32174600	Weak transcription	A549	lung

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