Variant report

Variant	rs62251611
Chromosome Location	chr3:34894019-34894020
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs62249355	0.84[EUR][1000 genomes]
rs62249356	0.82[EUR][1000 genomes]
rs62251603	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62251608	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62251609	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251610	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62251612	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62251613	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62251614	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62251615	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62251616	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62251617	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62251619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62251620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62251621	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7652586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv834655	chr3:34752929-34898824	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3415700	chr3:34806371-34914306	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv432407	chr3:34869616-34898125	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34885600-34897400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:34886000-34897000	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:34891400-34896200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr3:34893200-34897200	Weak transcription	Fetal Stomach	stomach
5	chr3:34893200-34897400	Weak transcription	Fetal Brain Male	brain
6	chr3:34893200-34897800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:34893600-34897400	Weak transcription	Dnd41	blood
8	chr3:34894000-34894200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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