Variant report

Variant	rs62251620
Chromosome Location	chr3:34905853-34905854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs62249355	0.84[EUR][1000 genomes]
rs62249356	0.82[EUR][1000 genomes]
rs62251603	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62251608	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62251609	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62251610	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62251611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62251612	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62251613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251614	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62251615	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62251616	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62251617	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62251619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251621	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7652586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3415700	chr3:34806371-34914306	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34898200-34906600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:34898400-34906200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:34904400-34906200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:34905000-34906200	Enhancers	Primary B cells from cord blood	blood
5	chr3:34905200-34906000	Enhancers	NH-A	brain
6	chr3:34905400-34906000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:34905400-34906000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:34905400-34906000	Enhancers	NHEK	skin
9	chr3:34905400-34906800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:34905400-34907400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:34905400-34907600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:34905600-34906000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr3:34905600-34907600	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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