Variant report

Variant	rs62251612
Chromosome Location	chr3:34898844-34898845
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs62249355	0.81[EUR][1000 genomes]
rs62249356	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62251603	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62251608	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62251609	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62251610	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62251611	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62251613	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62251614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251616	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251617	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62251619	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62251620	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62251621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62260220	0.81[EUR][1000 genomes]
rs7652586	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3415700	chr3:34806371-34914306	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34897400-34899000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:34897400-34900600	Enhancers	Fetal Intestine Large	intestine
3	chr3:34897800-34899200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:34897800-34899400	Enhancers	Fetal Intestine Small	intestine
5	chr3:34898200-34905600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:34898200-34906600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:34898400-34902000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:34898400-34904000	Weak transcription	Fetal Thymus	thymus
9	chr3:34898400-34906200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:34898600-34901000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:34898600-34901400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:34898600-34901800	Weak transcription	Fetal Brain Male	brain
13	chr3:34898600-34903000	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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