Variant report

Variant	rs62260220
Chromosome Location	chr3:34914171-34914172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs62251612	0.81[EUR][1000 genomes]
rs62251614	0.81[EUR][1000 genomes]
rs62251615	0.81[EUR][1000 genomes]
rs62251616	0.81[EUR][1000 genomes]
rs62251617	0.81[EUR][1000 genomes]
rs62251621	0.81[EUR][1000 genomes]
rs62260221	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62260222	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62262163	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834654	chr3:34747802-34916657	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3415700	chr3:34806371-34914306	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv590052	chr3:34910172-34937547	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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