Variant report

Variant	rs62256086
Chromosome Location	chr3:54355618-54355619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs3934631	0.93[EUR][1000 genomes]
rs3934632	0.90[EUR][1000 genomes]
rs3934633	0.94[EUR][1000 genomes]
rs4078006	0.93[EUR][1000 genomes]
rs4078007	0.93[EUR][1000 genomes]
rs41277447	0.88[ASN][1000 genomes]
rs55751124	0.82[EUR][1000 genomes]
rs55768606	0.83[EUR][1000 genomes]
rs55777513	0.90[EUR][1000 genomes]
rs55817503	0.90[EUR][1000 genomes]
rs55826666	0.84[EUR][1000 genomes]
rs55982339	0.84[EUR][1000 genomes]
rs56034762	0.83[EUR][1000 genomes]
rs56198536	0.90[EUR][1000 genomes]
rs56212431	0.84[EUR][1000 genomes]
rs56271940	0.93[EUR][1000 genomes]
rs56348221	0.89[EUR][1000 genomes]
rs56352534	0.90[EUR][1000 genomes]
rs56362821	0.93[EUR][1000 genomes]
rs56411589	0.84[EUR][1000 genomes]
rs57211759	0.84[EUR][1000 genomes]
rs57836319	0.83[EUR][1000 genomes]
rs57897895	0.90[EUR][1000 genomes]
rs57945354	0.93[EUR][1000 genomes]
rs58976292	0.92[EUR][1000 genomes]
rs59461034	0.93[EUR][1000 genomes]
rs59804205	0.83[EUR][1000 genomes]
rs59804657	0.93[EUR][1000 genomes]
rs60855497	0.90[EUR][1000 genomes]
rs61200778	0.83[EUR][1000 genomes]
rs61444952	0.93[EUR][1000 genomes]
rs62254157	0.93[EUR][1000 genomes]
rs62256085	0.88[ASN][1000 genomes]
rs62256089	0.81[ASN][1000 genomes]
rs62256091	0.83[ASN][1000 genomes]
rs6445640	0.84[EUR][1000 genomes]
rs6445641	0.92[EUR][1000 genomes]
rs6445643	0.93[EUR][1000 genomes]
rs6445644	0.90[EUR][1000 genomes]
rs6769262	0.84[ASN][1000 genomes]
rs6781457	0.93[EUR][1000 genomes]
rs6790114	0.93[EUR][1000 genomes]
rs7427601	0.83[EUR][1000 genomes]
rs7428562	0.91[EUR][1000 genomes]
rs7428712	0.93[EUR][1000 genomes]
rs7430091	0.93[EUR][1000 genomes]
rs7432978	0.83[EUR][1000 genomes]
rs7433995	0.90[EUR][1000 genomes]
rs7434171	0.93[EUR][1000 genomes]
rs7615455	0.90[EUR][1000 genomes]
rs7622924	0.93[EUR][1000 genomes]
rs7645884	0.90[EUR][1000 genomes]
rs7649860	0.93[EUR][1000 genomes]
rs9714322	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv817328	chr3:54250314-54380438	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54344000-54360800	Weak transcription	Psoas Muscle	Psoas
2	chr3:54352800-54357600	Enhancers	Hela-S3	cervix
3	chr3:54354600-54356800	Enhancers	Placenta	Placenta
4	chr3:54354600-54357400	Enhancers	Liver	Liver
5	chr3:54355400-54356600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:54355400-54357200	Enhancers	Fetal Intestine Large	intestine
7	chr3:54355400-54357200	Enhancers	Fetal Intestine Small	intestine
8	chr3:54355600-54355800	Enhancers	Fetal Muscle Leg	muscle
9	chr3:54355600-54356200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:54355600-54356400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:54355600-54356400	Enhancers	Ovary	ovary
12	chr3:54355600-54356600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr3:54355600-54357200	Enhancers	Fetal Kidney	kidney
14	chr3:54355600-54357200	Enhancers	Fetal Lung	lung

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