Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs41277447	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55715726	0.91[EUR][1000 genomes]
rs56305246	0.90[EUR][1000 genomes]
rs57711599	0.92[EUR][1000 genomes]
rs60921965	0.91[EUR][1000 genomes]
rs61027914	0.92[EUR][1000 genomes]
rs61566355	0.91[EUR][1000 genomes]
rs62254144	0.91[EUR][1000 genomes]
rs62254148	0.92[EUR][1000 genomes]
rs62254149	0.87[EUR][1000 genomes]
rs62254159	0.92[EUR][1000 genomes]
rs62256061	0.94[EUR][1000 genomes]
rs62256085	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62256086	0.84[ASN][1000 genomes]
rs62256089	0.88[ASN][1000 genomes]
rs62256091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62256099	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6445646	0.84[EUR][1000 genomes]
rs6810291	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7426971	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7428097	0.94[EUR][1000 genomes]
rs7434141	0.92[EUR][1000 genomes]
rs7635568	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv817328	chr3:54250314-54380438	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv817210	chr3:54365684-54511164	Enhancers Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54356600-54370200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:54359400-54367400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:54363800-54367800	Enhancers	Fetal Brain Male	brain
4	chr3:54364600-54368000	Enhancers	Brain Germinal Matrix	brain
5	chr3:54366800-54367400	Weak transcription	Fetal Brain Female	brain
6	chr3:54366800-54368000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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